Odup021973.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- -
- Assembly
- GCA_951361185.1
- Location
- OX592716.1:722503-724385[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7.6e-05 0.0056 17.7 2.0 3 23 173 193 171 193 0.97 2 10 0.00036 0.026 15.6 0.8 1 23 198 221 198 221 0.94 3 10 0.0017 0.12 13.4 2.1 2 19 227 244 226 248 0.93 4 10 0.014 1 10.5 0.6 2 23 253 274 253 274 0.96 5 10 0.0086 0.63 11.2 1.6 2 21 278 297 277 298 0.95 6 10 2.8e-05 0.002 19.0 0.5 1 23 307 330 307 330 0.96 7 10 0.0013 0.092 13.8 0.7 2 23 337 358 336 358 0.96 8 10 0.00018 0.013 16.5 0.3 1 23 364 386 364 386 0.98 9 10 0.031 2.3 9.5 0.8 1 23 392 415 392 415 0.93 10 10 0.0007 0.051 14.6 2.7 2 23 421 442 421 442 0.97
Sequence Information
- Coding Sequence
- ATGGAGTCAGGAACTGAAATTTTATTACCGGCACTAAAATTTGTTAGTGGTAACTGCGACCACATTTGTAGGTTATGTTTTGCCTCCACCGAGAACGAAGAAGTTTCATTAGAAGACAATGTACAGCTTCAAAGACCGTATTTTGACGATACTGTCTCTTTCATAAGCATGTTCGAAGACCTCGGCgtTAATAATGAAGATATCTTACCACAAGTAATATGCATCAATTGTGCTACTATGACAATCAGCTCTTATTTGTTCCGGAAACTTTGTCAATATTCTGATATGGAATGGAACAATGTTTGTAAAAAATTTAATGGGAGCTTAGACCAGGCAGAGACAGCAGGACCAAATACTCAAACAATGTATCTGATAGTCAATAACAGTGAAAATCTTGTCTTCACAAGCAAAAAAAGTAACTCAAACCGAAGTAAAAAGACTGCTTTAATTAAGATTAAAGAAGTTTCAAAAAGCAGACAAGCTTATGTGAAGACTAAGCATAAATCCAAAGTTATTTGTGAAGAATGTGGGGATAGATTCCCTTCAAAATGCCACTTACTAAAGCATATGAGAGTTCACAGCAAGACTAAACACCCATGCTCTCAGTGTCACAAAATCTTTGCATCACAAATACAACTTGAAGAACATGCTGAAAGAGTTCACTATccaaagaaaattaaatgtccCAAATGCTCTAAAAAGTTCAGTACATTAAAAATGTTGAAGTATCATGATAATTTCCACCATGTTGCTGCTGTTTGTAAGCTGTGCTTCGTCCAGTTTGCTTCGAAGAAAGAATTGAGAGGGCACTTAGATAAACATGATGTCAATAAATGTCCGAGATGcaaaaaaagctttttaaataaatacacatttaaATTGCACTTAAAGATTTGTGGTGAAACCAAGAAACTTCAATTCTTTTGTGATATTTGTAACAAAGGTTATGCACGTAAGAATGGTTTGCGCACACACTTGAAGATTGACCATGGTTTTGGAAACGTACTTTCTTGTAAGTGGTGTGATAAAAAGTTTGATGCTGTAAGCCGATTGAGGAACCACATGGTCAAACACACGAGGGAGAGAAACTACAATTGTGAGCACTGTGGTGGGAAGTTTGTTACGCCGGCAGCTCTAGTCTACCACACCAGGTTACACACAGGGGAGAAACCATTCACTTGTGATGTATGCGGTGAAAGTTTTCTATCTGCATCTAGAAGAATGGAACATAAAAGACGTAAGCACATTGGACCAACTAGAGAATGTCCAGTTTGCCATGTTAAGTTTGTAACTGGTCATCAATTGAGAAAGCATGTTCAAAGGCATTACAATTCACAAAGTAAACTGTACGTCCCAGAAGTACCACCACTTAATGAAATTTGTGTAGATCCTCAGGTCATATCATGA
- Protein Sequence
- MESGTEILLPALKFVSGNCDHICRLCFASTENEEVSLEDNVQLQRPYFDDTVSFISMFEDLGVNNEDILPQVICINCATMTISSYLFRKLCQYSDMEWNNVCKKFNGSLDQAETAGPNTQTMYLIVNNSENLVFTSKKSNSNRSKKTALIKIKEVSKSRQAYVKTKHKSKVICEECGDRFPSKCHLLKHMRVHSKTKHPCSQCHKIFASQIQLEEHAERVHYPKKIKCPKCSKKFSTLKMLKYHDNFHHVAAVCKLCFVQFASKKELRGHLDKHDVNKCPRCKKSFLNKYTFKLHLKICGETKKLQFFCDICNKGYARKNGLRTHLKIDHGFGNVLSCKWCDKKFDAVSRLRNHMVKHTRERNYNCEHCGGKFVTPAALVYHTRLHTGEKPFTCDVCGESFLSASRRMEHKRRKHIGPTRECPVCHVKFVTGHQLRKHVQRHYNSQSKLYVPEVPPLNEICVDPQVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00007477;
- 90% Identity
- -
- 80% Identity
- -