Odup023437.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- -
- Assembly
- GCA_951361185.1
- Location
- OX592718.1:4662681-4666760[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.1 5.2e+02 2.0 0.4 3 23 146 167 144 167 0.86 2 13 1.7 1.3e+02 3.9 0.3 1 23 173 195 173 195 0.95 3 13 1.2 85 4.5 1.3 1 20 199 218 199 220 0.91 4 13 0.0016 0.12 13.5 0.1 3 20 223 240 222 242 0.94 5 13 0.00045 0.033 15.2 0.3 2 23 285 307 284 307 0.94 6 13 5.7 4.1e+02 2.3 0.1 2 23 314 335 313 335 0.95 7 13 0.00076 0.055 14.5 0.2 1 21 367 387 367 388 0.95 8 13 0.0054 0.4 11.8 1.6 2 23 412 433 411 433 0.96 9 13 6.7e-05 0.0049 17.8 0.2 1 23 440 462 440 462 0.96 10 13 0.0026 0.19 12.8 2.5 3 23 470 490 468 490 0.97 11 13 7e-06 0.00051 20.9 4.4 1 23 496 518 496 518 0.99 12 13 0.00035 0.026 15.6 3.2 1 23 524 546 524 546 0.97 13 13 0.0016 0.12 13.5 5.9 1 23 552 575 552 575 0.97
Sequence Information
- Coding Sequence
- ATGAGTGAATTAGATTCGTATTGTAGATTTTGTGCCGAAATCAAACCTCTTCATGAAACAACAGACTTAACAGCGAACGTTCAAGCACGCCAAGAAATAATCGAAAAACTGACTTTATTACGAATTAACTTCGTCGATTTTACAAGTAAAATACTGCCAGAAAACATATGTGTGTGCTGTTTGGACACTTTAAATGTATCGCATGAGTTTTATACGAAAGTTAAAATATCTCAAGTTGTTTTATGCAATATGGTGACGAGTGAATTCAAGTCAGAGTTATGCGATGCCGAGTCCATTGATTTTTGTAATGATTACGATGTTAAAATGGAAAATAGTGGAGTTATAAGTGAAGataaacATATAATAAATCTACATGACCCAAAAGATACAGAAGACGGCGCCAAAGTGGAATCATGGCATGACTACCCATGGATCTGTGGACAATGTAAACTGGTGGTAGACAGCCTTCAAGCTCTGAGGATGCATTGTAGAGAGTACCATGATGTTTGTGGTGAATTTCACTGTGTTGATTGCAGTGAAACTGCTGGTGATTACGTTAGTTTTGTTAATCATGTGAAGGGGCATAGAGTGATCCACTATTGTGAATACTGCAACATAAAACTAGAAAATACGGAACACATACAAACTCACACATCCCAACCGAACTGCACGAAATGTGGTGAAATATTCCCAAACGCTACAACATTATTGAAACATTTGAGTGAATATCAAACTCCAAAATCAAAACAACATAGAAAGAATATATCGTCAGATTTAAAAGAGCTTTTGTCTTACGGTGTCGAGATTTTTGAGATAAATGAGGAAACACAGTCTTGGAAAGACTATTCATGGGTGTGCCTGTATTGCAGCATGAAGTTCCCAAATCAGGACTCCTTGAGAAGTCACACAAAAGAAGTCCACAATAAATGTTTTGCTATGAAATGTGTGGACTGTGTGTCAAGTTTGGACAATTTTGGAGAGTTTGTGGACCATGTTAAAATGCATAGAGTTAGTTTAAAATACTTCTGCCAATACTGCGATTCTCGCAACGACGACGACAATCAAAATATCATCCACATAAACAAACATTTGACAGACTTTCAATGCGACGCTTGCGGTGAAATATTCCAAAACAAAACAGACTTGCACAAGCACATATCCATATACAACCGACCTAAATCCAAAAGAGTACCGTTTAAAAGAAGAGAACGACCCACAAGCAAAGAAGACTTAACGTGCAACATTTGCAAAAAGCTGACCAAAAGTCTAACTAGTTTGCGTGCACATAAAAAGTTGCACACGGAAAGAAATAGAGATTATACGTGCGACCGTTGTGGTAAAGCGTTCTTCACAAAAGGGGCTTTGTCCGCCCATAATATCATCCACGAAAATCCAGAACCTCAAATATGTAAGATATGTAAAAAGAGTTTTCTAACTCTAACACGTTTGAAGAAACATGTGAAAACGCATTACGCGTCAAAACCTTTTCAATGCCCTGAATGTCATCGGTGTTTTAGATTGAAAGAACAACTGAAGGGACATATGATTACCCATACGGATGTAATGCCGTATTCTTGTCAGTATTGCAACAAGGCGTTTAGACATAGAAATGTTTTGAAGATACATGAGAATCAACACACTGGAGCGAGACCGTACTGTTGCGAGATTTGCAACATGGAGTTTTCAAATTGGTCGAATTGCAATAAGCATTTGAAGCGAAAACATGGCACGACACTCGCCAAAAATATGATGACACCACAAGGAAAGCTACCAATCAATCCGAAAACTGGAAAGCCGAAGAAGTTGAAAGACTTTGAGATGCTTAAAGAATGGACGGAGCAGATCTTGGTACCGTGTAAACGGGGGAAGAAGATTTGTAGTGAGACATCTGTTGCTAACGAGTAG
- Protein Sequence
- MSELDSYCRFCAEIKPLHETTDLTANVQARQEIIEKLTLLRINFVDFTSKILPENICVCCLDTLNVSHEFYTKVKISQVVLCNMVTSEFKSELCDAESIDFCNDYDVKMENSGVISEDKHIINLHDPKDTEDGAKVESWHDYPWICGQCKLVVDSLQALRMHCREYHDVCGEFHCVDCSETAGDYVSFVNHVKGHRVIHYCEYCNIKLENTEHIQTHTSQPNCTKCGEIFPNATTLLKHLSEYQTPKSKQHRKNISSDLKELLSYGVEIFEINEETQSWKDYSWVCLYCSMKFPNQDSLRSHTKEVHNKCFAMKCVDCVSSLDNFGEFVDHVKMHRVSLKYFCQYCDSRNDDDNQNIIHINKHLTDFQCDACGEIFQNKTDLHKHISIYNRPKSKRVPFKRRERPTSKEDLTCNICKKLTKSLTSLRAHKKLHTERNRDYTCDRCGKAFFTKGALSAHNIIHENPEPQICKICKKSFLTLTRLKKHVKTHYASKPFQCPECHRCFRLKEQLKGHMITHTDVMPYSCQYCNKAFRHRNVLKIHENQHTGARPYCCEICNMEFSNWSNCNKHLKRKHGTTLAKNMMTPQGKLPINPKTGKPKKLKDFEMLKEWTEQILVPCKRGKKICSETSVANE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01417188;
- 90% Identity
- -
- 80% Identity
- -