Odup024019.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- -
- Assembly
- GCA_951361185.1
- Location
- OX592720.1:576837-589527[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0017 0.12 13.4 3.3 1 23 421 443 421 443 0.98 2 10 0.02 1.5 10.1 4.6 1 23 450 472 450 472 0.95 3 10 3.5e-05 0.0025 18.7 0.7 1 23 503 526 503 526 0.96 4 10 0.87 63 4.9 0.1 2 19 534 551 533 556 0.91 5 10 0.035 2.5 9.3 0.1 2 19 595 612 594 614 0.93 6 10 1.4e-05 0.001 20.0 2.0 1 23 623 645 623 645 0.99 7 10 9.6e-05 0.0071 17.3 0.7 1 23 679 702 679 702 0.95 8 10 5.2e-07 3.8e-05 24.5 0.7 1 23 708 730 708 730 0.98 9 10 0.00036 0.026 15.5 4.2 1 23 736 758 736 758 0.98 10 10 1.9e-07 1.4e-05 25.8 0.7 1 23 764 787 764 787 0.98
Sequence Information
- Coding Sequence
- ATGTCTAGCGTATTCCTTTCAAACGAAACTACAACATTCTCGTTACGAATATGTCGAGGATGTCTCGCGACAGATGCTCGACTGTACGACATGCGCCAGAATCGGCTAATGGAGGCCTATTCCACACTACTGAGCGCTGAAataaatATAAGAGATGAAGACCCACATTACGTATGCAGCTACTGCGCTGCTCTGCTGTTGAAGTACGATACATTCAGAAAGAAGTGCATCGATTCAGTATTTCTATTCAGAAATGCAGAACATGAATATTATAATGTTACAACAGGATACAGATCAACTAATTTCGTACGATCTGAATTTGAAATAATAGACGTTGTTCCAAATTCAGATGTAGATTATGTTGATAAAACTCTAATACAAGAACTTAAAACTTCTGACATAACCGCAGATACAGACATAGCTTCAGATTCTGATGAATCCATAGATTTTGATGAGATATTAGAATCAAATAGTTCAGTTAGTGATGATAAAATGTCAATAAGTTctctaattaataaattacaaaataaattcaatttcaacAGTGGTGAAAACAAACCTTTATTAAAAGACTTTAAAGTCAATTTAGATGCAATTGGTAAAAAAGCTTCAAGCAACTCTAAGACTCATAGAATGAACCAGTTGTATGAAATTGTTAGATGTATTCAGTATTCTAGTGACACCACTACAGAATTACTGAGAATATTTGACACAGACTGCATggatatacttaaaaaaaaagccaacacTTCCGCATCAGGGAACGGTAAAGTTAAACAAAAACCAatttcaaaagtaaataaaactacaGCTGCGAAATTAAAAAAGATATCTCAAAAAGATGATGTGGTAGAAACTATAGATGTTGCAACAAGTCTTACTGTTGAGATTAAATTTGAACCAGAGATTAACAATGACAATTCATGCCTTGATGTTTCAAAAGAAACAGTTGAAATATCAAATGAAACTGAATTTATAAAATGTGAGGCAAATTCAAACAGTTCTACCCTAAAAGATGTTACAACTGTTGCTGACGATAAAAAgagtttaaaaagaaaagtaaattATTCCAATGCAAAAGGAAATAAAGATTACAAATGTTTAGTATCTACAGTTTTCAAAGGTAAAAAACCAAAGAAAGAAAAATTCTCAGAAGAATACTATGCAATGTTTAAGATAAAAGTCAAGTATTTAAGTAGAGAAGAACAAATTAAAGAGATTGAAGATAGAAAAGAATGTGATAATTACAAGCAATTGGATTTCAAATGTAACCTTTGCTACAAAGGATTCAATTTCGAAAAGACATTTAAAAATCATATGTTGCTGCACAATGATATCAGCGGCAAGTTTGTCTGTGACATCTGTCAGTGTCACTTCACAAATAAGAACAGACTCCAAATACACAAGTCTGCTCACAAAAGAGCGTTCACTTGCATTGAATGCGGGCACACAACTAAACATGGTCATCAAGCAATTCAACATAGTAAATGGCACACCGGAAAGAAATATTCTTGTAAAGATTGCGGGAAAGAATTGAGGAATAAATCTAGTCTGTACGGACATATAAAGTTGTCTCATCCAACAAGTGAGCAGCTGGTGCGTTGTGAGATCTGTGGGGACTCCTTCAATGGACTACCGGGACTTAAAACACATGATATAAGATCACACAAAGAGATGTATTCACCGGAGTGTCACTGCTCAGTATGtaagacgcagttctactgctcggacgcgtttaaggcgcatcgaggaaccgacggagtgtgcgacactaaacacaaGTATTGTGTGCGCTGCGGTGAGTCGTTTGACACTGAGGAACTGCTGAAGGAACATGAGATAGAACAACGgaaactacaaaatatttttaaatgcgaTGTATGTCAAAAGGTGTACAATAGTTACGGTAAATTAAAAAGTCATCAACGTAGTCACCAAGCGTCGTATGTCACGTGGCTTAAATCGTACGGCCGCAACCGGAGGGCTAGCGCAGTCACAAACAGTGCTTGCAACACTGAATCTAAGAACAGGGAATACATGTGCGAACTGTGCGGGAAGGTGACCCggACTAAAGGTGCCCTGCAACTACATCTCCATAACATGCATTCCGATGAGAGACCATTTCCGTGTTCCGACTGCTCGAAGACATTCAAAACTGCAAATACTTTAAAGGAACATATAAGAATACACACAGGAGAGCGGCCATTCCAGTGCGACCACTGTCAGAAGGCATTCCAATGCAAATCAAATCTGGTTCGACATATATTAGTGCACACAGGCGAGCGTCCGTACTCATGCAACATCTGTGGAAAAACGTTTACCGACAGATCATACATCAAGATTCATATTAAAACTGTTCACATGAAAATACCTATGCCGCCCAGGATTCGACGGAGCCGGGCAAGCAAGAAAACAgattaa
- Protein Sequence
- MSSVFLSNETTTFSLRICRGCLATDARLYDMRQNRLMEAYSTLLSAEINIRDEDPHYVCSYCAALLLKYDTFRKKCIDSVFLFRNAEHEYYNVTTGYRSTNFVRSEFEIIDVVPNSDVDYVDKTLIQELKTSDITADTDIASDSDESIDFDEILESNSSVSDDKMSISSLINKLQNKFNFNSGENKPLLKDFKVNLDAIGKKASSNSKTHRMNQLYEIVRCIQYSSDTTTELLRIFDTDCMDILKKKANTSASGNGKVKQKPISKVNKTTAAKLKKISQKDDVVETIDVATSLTVEIKFEPEINNDNSCLDVSKETVEISNETEFIKCEANSNSSTLKDVTTVADDKKSLKRKVNYSNAKGNKDYKCLVSTVFKGKKPKKEKFSEEYYAMFKIKVKYLSREEQIKEIEDRKECDNYKQLDFKCNLCYKGFNFEKTFKNHMLLHNDISGKFVCDICQCHFTNKNRLQIHKSAHKRAFTCIECGHTTKHGHQAIQHSKWHTGKKYSCKDCGKELRNKSSLYGHIKLSHPTSEQLVRCEICGDSFNGLPGLKTHDIRSHKEMYSPECHCSVCKTQFYCSDAFKAHRGTDGVCDTKHKYCVRCGESFDTEELLKEHEIEQRKLQNIFKCDVCQKVYNSYGKLKSHQRSHQASYVTWLKSYGRNRRASAVTNSACNTESKNREYMCELCGKVTRTKGALQLHLHNMHSDERPFPCSDCSKTFKTANTLKEHIRIHTGERPFQCDHCQKAFQCKSNLVRHILVHTGERPYSCNICGKTFTDRSYIKIHIKTVHMKIPMPPRIRRSRASKKTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -