Basic Information

Insect: Ochropacha duplaris
Gene Symbol: X-element\ORF2
Assembly: GCA_951361185.1
Location: OX592704.1:6236398-6246936[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0082 0.6 11.3 0.1 5 23 460 478 458 478 0.96

2 7 9.3e-07 6.8e-05 23.7 1.2 1 23 484 506 484 506 0.99

3 7 5.8e-06 0.00042 21.2 2.7 1 23 512 534 512 534 0.99

4 7 4e-06 0.00029 21.7 2.6 1 23 611 633 611 633 0.98

5 7 5.3e-05 0.0039 18.2 3.1 1 23 648 670 648 670 0.98

6 7 3.7e-07 2.7e-05 24.9 1.5 1 23 685 707 685 707 0.99

7 7 0.00016 0.012 16.6 2.8 1 23 713 735 713 735 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0082	0.6	11.3	0.1	5	23	460	478	458	478	0.96
2	7	9.3e-07	6.8e-05	23.7	1.2	1	23	484	506	484	506	0.99
3	7	5.8e-06	0.00042	21.2	2.7	1	23	512	534	512	534	0.99
4	7	4e-06	0.00029	21.7	2.6	1	23	611	633	611	633	0.98
5	7	5.3e-05	0.0039	18.2	3.1	1	23	648	670	648	670	0.98
6	7	3.7e-07	2.7e-05	24.9	1.5	1	23	685	707	685	707	0.99
7	7	0.00016	0.012	16.6	2.8	1	23	713	735	713	735	0.98

Sequence Information

Coding Sequence: ATGTCAAGTCCTACTTCAACACAGCGCATAAGCAATGTGGCGTTCTCGCGTGATGAGGTACTGAAAACCCTTCAAAGTCTGGATCAAACTAAAGGTGCTGGTTGGGATGGAATACCACCTTTGCTTATTGTAAAATGTCGAGAAGCGCTCTCTCTACCTTTATCTATTATATACAATACCTCTCTCTCGTCCGGTATTTTTCCATCTGCCTGGAAGGAATCTAGAATAGTACCTATTCACAAAGGAGGCGATGCTGCCTCCATCAAAAATTATAGACCCATATCAATATTGCCTGTTTTTGGGCACATGATATCACCACAGCAATTTGGCTTCCATAAATCTCGATCCACTGCAACAAATCTCATATCCTTTGTATCATTTCTCACCGACTCTATGGATGCTCGTATTCCTGTTGATACCATCTACACTGATATAAGTAAAGCATTCGATATCGTAAATCATAAAATCTTAATTAACAAGCTTTCAATATTTGGTTTTGCAGGAAATTTGCTTAATTGGTTTACCTCATATCTAGTTGATCGATACTCTAGGGTTGTTGTGAGTGGATACTGTTCAGAGCGTTTCCCAGCCACGTCTGGAGTCCCGCAGGGCTCTATCCTTggaccaatattattcaatatttttattaacgaCATTGTTCCCCTCTTTAAACAGTCTAAATGTTTTCTCTATGCAGATGATCTCAAATTAGCTTTGCAGATTAAGTCTGAATCTGATACCCTGTTACTCCAGGAAGACATTGACCGACTGTCTCGGTGGtgtgatattaataatatgaGCATGAACATTAGTAAATGCAAATCTATTAGATTCTCTCGAAACTTGCAACAATCTTCACATTCTTATTATATTGATAACATGGAATTAGAGGAAGTGGATCACATTCGTGATCTTGGTGTATATTTAGATAGGAAGCTACGATTCCATACGCACATCGACAAAATTGCAACAAAGGGATATCAGATGCTGGGATTTATTTTAAGGAGCAGCAAGGATTTCAAGAAACCAGACACTAAAATCATGCTGTATTCTACCCTGGTCCGATCTACCCTCGAGTACTGTGTGCAAGTCTGGTCTCCGCATTATGACGTGCATATTAATCGTCTGGAAAGGGTCCAGAAAAGATTTCTTTGGCATCTTTCATACCAGTGCAATGTAGCCAAGATGTTACCCTCCTACAAGGATCGTCTCACACATTTCAAAATGAATAGCTTACGTGAGCGGAGACAATTACTAGATCATATGTTCCTATATAAGGTTGTTAACGGTATCTTGGATTGTCCTCTTTTAGTAGAATCAATTAATCTGAGCGCCCCCGTCAAATTACCTCGTCCTAGCATATATACTCCATTCCtgGTTTGCGGCAAAGTTCTATCGTCCGCTTCATCATATTACGTTCACATGAAGCTTCACTCTGGAAACAAACCTTTCCAATGCACAGTATGTGACGCAGCATTCTGCCGCAAACCGTACCTGGAAGTGCATATGCGGACTCACACCGGTGAACGGCCTTTTCAATGCGACTTGTGTCTCAAGAGATTCACGCAGAAGTCCAGTCTCAATACGCACAAACGCGTCCATACTGGTAAGTTCTTGCCAACACCACAATTAGAACTCCTGCTTAGTATCGGCCAACATTGTCAGTTGGTGTTAAAGAATCAAGAACAAATCGATTGTGTGTTCTTGTGTAAGTGCTGTGTGCTGTGTCCCAAACACAGTTATGAGCGGAGTGTGTGTTTGTTGTTGGAATGTGGCCTGCCCTGCGTTCTAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGCCCCTACAAGTGTGACCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGGTTAG
Protein Sequence: MSSPTSTQRISNVAFSRDEVLKTLQSLDQTKGAGWDGIPPLLIVKCREALSLPLSIIYNTSLSSGIFPSAWKESRIVPIHKGGDAASIKNYRPISILPVFGHMISPQQFGFHKSRSTATNLISFVSFLTDSMDARIPVDTIYTDISKAFDIVNHKILINKLSIFGFAGNLLNWFTSYLVDRYSRVVVSGYCSERFPATSGVPQGSILGPILFNIFINDIVPLFKQSKCFLYADDLKLALQIKSESDTLLLQEDIDRLSRWCDINNMSMNISKCKSIRFSRNLQQSSHSYYIDNMELEEVDHIRDLGVYLDRKLRFHTHIDKIATKGYQMLGFILRSSKDFKKPDTKIMLYSTLVRSTLEYCVQVWSPHYDVHINRLERVQKRFLWHLSYQCNVAKMLPSYKDRLTHFKMNSLRERRQLLDHMFLYKVVNGILDCPLLVESINLSAPVKLPRPSIYTPFLVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTGKFLPTPQLELLLSIGQHCQLVLKNQEQIDCVFLCKCCVLCPKHSYERSVCLLLECGLPCVLDEHMRALMVKDRPYKCDLCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -