Basic Information

Insect: Ochropacha duplaris
Gene Symbol: -
Assembly: GCA_951361185.1
Location: OX592704.1:7301720-7312719[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0018 0.13 13.4 1.5 1 20 6 26 6 28 0.92

2 14 1.8 1.3e+02 3.9 0.1 2 21 34 53 33 54 0.91

3 14 0.17 13 7.1 0.3 1 12 204 215 204 224 0.86

4 14 5 3.7e+02 2.5 0.2 1 19 359 377 359 377 0.97

5 14 9.7e-05 0.0071 17.3 2.3 1 23 384 406 384 406 0.99

6 14 0.0031 0.23 12.6 2.2 1 23 419 441 419 441 0.99

7 14 5.8 4.3e+02 2.3 1.5 1 10 466 475 466 487 0.72

8 14 0.00037 0.027 15.5 0.3 3 23 495 515 493 515 0.96

9 14 0.0013 0.097 13.8 2.3 1 23 531 553 531 553 0.98

10 14 1.5e-06 0.00011 23.0 4.5 1 23 559 581 559 581 0.98

11 14 0.00043 0.031 15.3 5.4 1 23 587 609 587 609 0.97

12 14 2.1e-06 0.00015 22.6 0.4 1 23 615 637 615 637 0.98

13 14 0.00047 0.034 15.2 1.1 1 23 641 663 641 663 0.98

14 14 0.00069 0.051 14.6 0.1 1 23 671 694 671 694 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0018	0.13	13.4	1.5	1	20	6	26	6	28	0.92
2	14	1.8	1.3e+02	3.9	0.1	2	21	34	53	33	54	0.91
3	14	0.17	13	7.1	0.3	1	12	204	215	204	224	0.86
4	14	5	3.7e+02	2.5	0.2	1	19	359	377	359	377	0.97
5	14	9.7e-05	0.0071	17.3	2.3	1	23	384	406	384	406	0.99
6	14	0.0031	0.23	12.6	2.2	1	23	419	441	419	441	0.99
7	14	5.8	4.3e+02	2.3	1.5	1	10	466	475	466	487	0.72
8	14	0.00037	0.027	15.5	0.3	3	23	495	515	493	515	0.96
9	14	0.0013	0.097	13.8	2.3	1	23	531	553	531	553	0.98
10	14	1.5e-06	0.00011	23.0	4.5	1	23	559	581	559	581	0.98
11	14	0.00043	0.031	15.3	5.4	1	23	587	609	587	609	0.97
12	14	2.1e-06	0.00015	22.6	0.4	1	23	615	637	615	637	0.98
13	14	0.00047	0.034	15.2	1.1	1	23	641	663	641	663	0.98
14	14	0.00069	0.051	14.6	0.1	1	23	671	694	671	694	0.96

Sequence Information

Coding Sequence: ATGGGGGATCCAATATACACTTGCCCACTTTGTTGCAATAAAACGTTTACTAATAAGCAATCTTTACAGGTCCATTTGTCAGAAATTTTGCTTAATTTGTATTGTCCTATTTGCAAAAATAAATGGTCATCTTTAGTGCACCTTATAGAACACTTGAACCTTGATAATTGCCAGCCAGATGATACAGAACACACAATTGTTTTCGACACCGCTCCTCAAGGCAGAGAGAATGAAAGTGTATCTGAAATTTCTAATTCAAATGTTACTCAATTAGAACATTTAGCTCACTCTGGTTCAGACCAATTTTCACCCAATACCCTGGATACACAAGTCAATAATGAGATGTATGTAGAATTTCTGAACAAACAGTTGTCAAAGCCATGCCTTCAAACTCAAACAATCAAACTTGTGAGAGACCCGGATGAAGATCGGGAGTCATATTATGTTGTGACACAAGACAATGCTGAATTGGGAGCAGGACATACTAttgttacaaaacaaaacaaggaTGGGACAATTTCCTTAACTGCTGTTAAAGACATGAAAATAGAAAGTGACACATTAATATCCCAATCTGAGAATGATGTTGAAGATAGTCAGGCAGAGATCTACAGTTGTAACACATGTGGTGTATCCTTCTCTTCTGTGCTTGACCATATACAGAACTATCATAATGACCAGGAGGTTGTTGTGGAGGAACCTATAGAAGAAGGTGAAAATGACACAGTACCCATAGAGTATGACAGTCTCGACCAAGATCAAGATCCATTGACTCTGAGCGATAAACAAGCTCCGCGGCGGGTCATTACAGACACAGGCAACATTGTGGAGGCACCTTTGGTTGTGAAATCAATCACTGAATTGCAATCACAGCATATAGTTCCTACAAATCTCAAATcggaagaggtaacagataatGAAGGACGCGTGTACACCAGGCGTTATGTGCAAATTGAAAAATTCTGTGACAGTGTCATAAAAGATATCAAAGAAAATGATGATAAAGATGGCGGTCCATATCACAAGGTTGTGCTTAAAGAAGTGCAAACGGCGAGTGGGAACAatgttaaaatgtatcaatGTATGTCATGTAATATTTATGTCAGTTCATTGAATGAGTTTAAAGCACATCCATGTAAAactttaaaatataaatgtctGCACTGTCCAGTTGCTTACGAAAATTCAAAATCTCTGTGTGCACATATGAAAGTGCATAAACTTAAAGCAGAGGGCAACACTAAAGTGGCAGTGTACGAATGTGAAGTTTGCTGCACTGTGTTTCCGTCGAACAAGTCTTTGAAGTTACATAAACGGATGCATGATCCTATCAAAGCGCGTCCTATCGAGCCGCCATTAGTTAACAGATTTGGTAAGGAACCAAGTGAAGCCAGATATTGTTGTCCAACTTGCGATAAAATGATACCCATAGACTATAAAACAATACACCAGAACTCTCATAAATCCAGCGACAAAATGAACTGTCAAATATGTAACAAAAAGTTTGTCTCTGAAGAGTATTTGGACATGCATATGACTGTTCATAATATAGATAAGGTAGCTGTGAACAAACAAGACAAATCACTCCCATACAACTGTTTGTACTGCAATAGACGGTTTGCTAGGCCACATGAAAAAGTCAAACATGAAAGAATACATACAgGCGAGAAGCCGCACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGTCTCACTCTACACATGCGCACGCACACAGGCGCACGACCATACGCCTGTCCACACTGTGGGAAGAGGTTCAAAGCGCATAGCGTATTCAACCATCACCTACTCACGCATTCGGATGTCCGCGCGTACAAGTGTCCATATTGCCCAAAGGCGTTCAAGACCTCGGTACAATTGGCCGGACACAAGAACTCGCACACCAAGCCCTTTTCCTGCCAACATTGTAATAGGCCATTCGCATCGCTGTACGCGGTCCGCGTTCACACCGAAACGCACTCGCGACAGAACAACCTTAAGTTCTCATGTTCGCTCTGCGGCGCGAGTTACGCGCGCGCGTTCGCACTCAAAGATCACGTCAAACAAATACACAAGCAAGACATCGAGTCAATTGAAAATATGGGTGGAGTCAAAGAAGAGGATTGGATAGTCCATGAGAACTCGAACAATACCCGATCTGTTAAGTCAGCTTCGGGCCTGCCCACGGAGatAAATGTACTGGGGATGAGCTCCAATGAACTCGTAGTTCCATAA
Protein Sequence: MGDPIYTCPLCCNKTFTNKQSLQVHLSEILLNLYCPICKNKWSSLVHLIEHLNLDNCQPDDTEHTIVFDTAPQGRENESVSEISNSNVTQLEHLAHSGSDQFSPNTLDTQVNNEMYVEFLNKQLSKPCLQTQTIKLVRDPDEDRESYYVVTQDNAELGAGHTIVTKQNKDGTISLTAVKDMKIESDTLISQSENDVEDSQAEIYSCNTCGVSFSSVLDHIQNYHNDQEVVVEEPIEEGENDTVPIEYDSLDQDQDPLTLSDKQAPRRVITDTGNIVEAPLVVKSITELQSQHIVPTNLKSEEVTDNEGRVYTRRYVQIEKFCDSVIKDIKENDDKDGGPYHKVVLKEVQTASGNNVKMYQCMSCNIYVSSLNEFKAHPCKTLKYKCLHCPVAYENSKSLCAHMKVHKLKAEGNTKVAVYECEVCCTVFPSNKSLKLHKRMHDPIKARPIEPPLVNRFGKEPSEARYCCPTCDKMIPIDYKTIHQNSHKSSDKMNCQICNKKFVSEEYLDMHMTVHNIDKVAVNKQDKSLPYNCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVFNHHLLTHSDVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHSRQNNLKFSCSLCGASYARAFALKDHVKQIHKQDIESIENMGGVKEEDWIVHENSNNTRSVKSASGLPTEINVLGMSSNELVVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01252072;
90% Identity: iTF_01417078;
80% Identity: -