Odup022540.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- -
- Assembly
- GCA_951361185.1
- Location
- OX592717.1:2281853-2284745[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.58 42 5.4 0.6 2 23 46 68 45 68 0.90 2 19 0.0088 0.65 11.2 0.7 1 23 139 161 139 161 0.98 3 19 0.0067 0.49 11.5 0.0 1 23 165 187 165 187 0.96 4 19 2.6 1.9e+02 3.4 1.4 1 21 192 212 192 215 0.83 5 19 0.29 21 6.4 3.1 1 20 220 239 220 243 0.75 6 19 6.8e-05 0.005 17.8 1.5 2 23 251 273 250 273 0.95 7 19 4.3e-06 0.00032 21.6 4.2 1 23 279 301 279 301 0.98 8 19 2.7e-06 0.0002 22.2 0.4 1 23 307 329 307 329 0.99 9 19 0.19 14 6.9 0.8 1 13 335 347 335 350 0.91 10 19 0.035 2.5 9.3 0.2 1 23 426 449 426 449 0.93 11 19 1.4 1.1e+02 4.2 0.1 2 23 476 498 475 498 0.88 12 19 0.29 21 6.4 0.1 2 23 521 542 520 542 0.96 13 19 0.00039 0.028 15.4 0.3 1 23 546 568 546 568 0.96 14 19 0.00018 0.013 16.5 1.9 1 23 573 596 573 596 0.94 15 19 0.026 1.9 9.7 1.7 2 23 604 626 603 626 0.92 16 19 0.00066 0.048 14.7 1.8 2 23 634 656 633 656 0.95 17 19 0.023 1.6 9.9 3.2 1 23 662 684 662 684 0.96 18 19 6.5e-06 0.00047 21.0 3.7 1 23 690 712 690 712 0.99 19 19 0.00012 0.0091 17.0 3.0 1 23 718 741 718 741 0.98
Sequence Information
- Coding Sequence
- ATGTTGAGTATGAAATCGAAAGCGGCATCTTCTGCGAAAGTAACGGAACATGTTTGGAAACATCGCCTAAACATCAGGCAAATACTCTTATATTCCAACGCTACTCCGATCCGTCGATACGAGAATGCAGAATTTCTTTGTTGCTTTTGCTATGAACAATATCCAGACGCAGCCGCCTTAAAAACTCACACAATCCAAGAACACGACGAAGCAACTAAGAAAACATTCATGCAAACCGTAGGAATGTCATCGTTTTTAGTGAAACTTGATATCACCTTTCTAGAATGCAATATTTGTTGCATTAGTATCGATTCCCTCCAGGAACTTATCGAACATCTAATCGATCATAGAAAATGTTATTATACAGACGTAAATAACCATATACTTCCGTTGAAATTTGAAGATGGCGATATATTTAAATGCGTCCTTTGCGACAACATTCTCAACACATTCAAATCTTTGCAAGAGCATATGAATTCTCACTACAGGAATTATGTCTGTACCGTTTGCGGAGCAGGGTTCGTCAACGGACAGATGCTAAGGGCACACAACGAAAGTCACACGAAGGGATCCTTCAAATGCAATTACTGCTCCAACATTTATGACACCCTCAGGAAGAAGAAATCTCACGAGGGTAGTGTACATATGAAAATGTTGCACAAATGTGGCTATTGCAATGAAAAATTCAACAGTTACGATCGGAAACTTCACCATTTAGCCGACGGGCATGGAGTGCCGATGCCAAATATTGTGTGCCAAGCGTGCGGGAAGACGTTTCAGAAACAGTCGCTTCTGACGAGACACATTCATAAAGACCATCTGATGGAGAAACCTCATAAGTGCACTGAATGCGATAAGGCATTTTTCTCAAACAGTAAGCTGAAAGATCATATGCAGAAGCACTTCGGCCTGAAAAAGTACGTCTGTGAGATCTGTTCGAAGGCGTTTATGAGAATGAAGAATTTGAAAGAACATATACGAATACACATGAACGATAAGCGATTCAAGTGTGAATTGTGCGGTCATGCATTCGTTCAAAAGTGTGCTTGGGCATGTTCCCCGcctataaaaaatgaaaaagttgAAATCACTGTGAGCGACTTAGTGATTGTGCCTCAACCTACGCTGAATACTGTTAATAAAACTAAGACAAAGGCAAAGGGGAAgcataacaaaacaaaagaccTACCAGAACTAAATAAGCATAGAGCAAATATCCAAACGATACTGGAGTGCTCTAACGCGACGCCAATAAAAAACTGCGGGGACGCTGGATACGCGTGCTCTTTCTGTACAGAATCTTACCAAATACCGGCGGACCTCAAGCGGCACACGATAGAGTCACACGATGATAAAACCAAAAAGACATTCACGAAGGGCACGTTGATGTACAACTATCTAGTCAGACTGGATATCACTTCTCTGCGGTGCATAATTTGTGATACCAATATAGAGACGTTGGAACAATTAACCAATCATCTGATCGAATCCCACGGAAAGATCTTATACAAGGATATAAAAAGTCACATCTTGCCGTTCAGGTTCGATGACCAAGATTTACGATGCGTTATTTGCCAGAGCGCATACAACAAATTCAGAGGACTACTTGAACACATGGCAATGCACTACAGAAATTATATTTGCGATGTTTGCGACGCCGGATTCGTTAACCGATCCAGTTTTCACAGACACGCTGAAGTTCACCAAGTTGGCACTTATAAGTGCGATAGGTGTCCAAAAGTGTTTAAAACACTGTCAAATAAGAAATCCCACGAAAAAGGTACACATATCTTTGGCCACATGCTGAAGAAGTGTGGCTACTGCAATGAGAAATTTAATACCTATCGAAAGAAACAACGACACTTGGCAGAGGTGCATGGTGTCCAGCAAAAAGAGAAGAAGTGTCTAGCTTGCGAAAAAACCTTTGAATATCAGTCAGATTTAACGAACCATACAAAGAAATATCACTTGATGGAGAAGCGGCACAAATGCCTGCAATGTGATATGAAGTTTTTCGATACTAAGGAGCTGAAGTCGCATGTGGTGAAACACACTGGCGTCCGTGAGTTCCAGTGCGATGTGTGCCAGAAGTGCTATGGAAGGAAAAAGACTTTAAGGGAGCATATGCGGATACATGAGAATGACAGGCGATTCAAGTGTGAGCACTGCGGTCAAGCTTTCGTCCAGAAATGCAGTTGGGCGGGGCACATGCGCTCCAAACACGGAGACGTGgtgtaa
- Protein Sequence
- MLSMKSKAASSAKVTEHVWKHRLNIRQILLYSNATPIRRYENAEFLCCFCYEQYPDAAALKTHTIQEHDEATKKTFMQTVGMSSFLVKLDITFLECNICCISIDSLQELIEHLIDHRKCYYTDVNNHILPLKFEDGDIFKCVLCDNILNTFKSLQEHMNSHYRNYVCTVCGAGFVNGQMLRAHNESHTKGSFKCNYCSNIYDTLRKKKSHEGSVHMKMLHKCGYCNEKFNSYDRKLHHLADGHGVPMPNIVCQACGKTFQKQSLLTRHIHKDHLMEKPHKCTECDKAFFSNSKLKDHMQKHFGLKKYVCEICSKAFMRMKNLKEHIRIHMNDKRFKCELCGHAFVQKCAWACSPPIKNEKVEITVSDLVIVPQPTLNTVNKTKTKAKGKHNKTKDLPELNKHRANIQTILECSNATPIKNCGDAGYACSFCTESYQIPADLKRHTIESHDDKTKKTFTKGTLMYNYLVRLDITSLRCIICDTNIETLEQLTNHLIESHGKILYKDIKSHILPFRFDDQDLRCVICQSAYNKFRGLLEHMAMHYRNYICDVCDAGFVNRSSFHRHAEVHQVGTYKCDRCPKVFKTLSNKKSHEKGTHIFGHMLKKCGYCNEKFNTYRKKQRHLAEVHGVQQKEKKCLACEKTFEYQSDLTNHTKKYHLMEKRHKCLQCDMKFFDTKELKSHVVKHTGVREFQCDVCQKCYGRKKTLREHMRIHENDRRFKCEHCGQAFVQKCSWAGHMRSKHGDVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -