Odup011593.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- -
- Assembly
- GCA_951361185.1
- Location
- OX592701.1:10208876-10210723[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.9e-07 0.00013 22.2 0.1 17 37 1 22 1 26 0.90 2 3 3.1e-08 1.3e-05 25.4 0.1 3 38 110 145 108 151 0.89 3 3 2.5 1.1e+03 0.0 0.0 9 20 144 156 143 156 0.88
Sequence Information
- Coding Sequence
- ATGAGTTTAAAAACTGCTTCTATTAAATACGGAATTCCACGAACTACTTTGTACCGAAAAGTAAAATTGTTGAAACTCGGGTTTGAAATTTCCGTTAAACCAATATTAGGAAGATTTAAAAGAACTTTCCCAGAGAAATACGAAGAACAACTAATTAAACGTGTCGAAGACCTTAAGAAAATAGGAATTCAGTTAACAGTCAAAGATTTTTTGGAGCTCACTTACGAATTTGCGGAAGAGTTCAAAATTTCGCATCAATTTAATGCTTCTAAGCGGATAGCTGGACGCAGAACGAAAACTGGTAGAAATAAATGTTCGTGGAATCATAATGACTTTAAAACTGCCATTGAGAAAGTCATGTCTAGAGAGATGTCATTGCATGTAGCCTCTAGAAACTATAATATTGCATTATCAACTTTATCTAAAAAAGTAAGAGCAATAAGAGAGGGTAAAGAAATATCTTTAAATCTAAAGTTAGGAAGAGGTCCAACATTTCCAGTGAACTATGAagaaaaacttattaaacatgTCGAAGATTGGAAAAAGAAGGGAATTTATTTAACCAAAACGGAATTTTTAGAGTATACTTACGCATTTGCGAAACAGATCGGTATTTCGCATCACTTCAATAGTGCTAAGCGCAAAGCCGGTGAAGATTTTTATAGGGGTTTCCGAAATCGTCATCCTGACTTCAAATTGAAGTAA
- Protein Sequence
- MSLKTASIKYGIPRTTLYRKVKLLKLGFEISVKPILGRFKRTFPEKYEEQLIKRVEDLKKIGIQLTVKDFLELTYEFAEEFKISHQFNASKRIAGRRTKTGRNKCSWNHNDFKTAIEKVMSREMSLHVASRNYNIALSTLSKKVRAIREGKEISLNLKLGRGPTFPVNYEEKLIKHVEDWKKKGIYLTKTEFLEYTYAFAKQIGISHHFNSAKRKAGEDFYRGFRNRHPDFKLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -