Odup011607.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- -
- Assembly
- GCA_951361185.1
- Location
- OX592701.1:10333375-10349816[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4e-12 2.3e-09 37.4 0.1 2 44 508 550 507 551 0.91 2 2 4e-10 1.7e-07 31.4 0.1 2 43 625 666 624 667 0.90
Sequence Information
- Coding Sequence
- ATGATCCTCCGAAGTACTGCAGAAGTAGTGATGGTTCTTGGATTAGGCTATAAGAATCAACCGTTAGGCTACAAGACTCACGTAAAGCTACAAAATGCAGAAAAATACAGAAAAAGACATACTTACGGTGAAAACGCATTTGAGAACCTTATTATCAGTGGAATAACTTCTGAAAATGTCCAAGATAACGGTTCAGATGATGATGTCATTGAAGTAGTCAGAGATGAAGCACCAATTGAAATTATTTCTGATGACGAGGAATTTGAACGAGAGAAAACTCAACAAACGCAGCATTCTACTATAATCcaaaattttcatttcaccTCCATACCAGCAGCTACTGATAGCCTTATTAAAGATAACGAAGACGTAACAGATATGGCAGATCCGCTTAGAAACTCAAAAGTTAATTGTGGcgagataattaattctctaatacCACCAGTAGAAGAATCATCTGTACCAAACATTGTAATGGAAAGTGTAATAAAATCAACAGATTTTTTATCAAACCATGAAAATAACGATGAAAACGTTTTTGTCAATGTGACTGATGACTGTAACATGAATGTTTGTAATGATCCGCTACAATTGGAAGTAAATAACCCAGAGTCTCAAGTAGatgatgtaaatgaaaaatcgaTGGATTGTATGAATAAAGCGGAGGTTCCTTCTAAAATTGATGACTTTGGCGCAGATCCTTTTTATGAACTACCAGAAAACCACGTTCGAGAGacattaataaatgttttcgAGGGTCCATATGAAGACGAAGACATAAAACCACTACTGGACGATATTAATATTCCAGATGAAGGTAATACAGTAAAACCATCAGGGGCTCCTTCAGCAGCAGTTTCCATTCCTGGTCTGGCCACGGAGTTCCGAGCCTTTAAGGATTTTGTCATCAAGGCCCTGGATATGCTTCGCACCCAAGTAGCGCTTCTTTCCAGACAACAGGATGATCTTGAGATGCGGGGACGTAGAAAAATCCTTCTCATACATGGAGTTGCCGAGCAAGATGCTGAAGATGTGGTCGCAGTGGTTGCTGATTTGGCAACTAACCGCCTGAAGCTCCCCAATTTTAACAGTGCCGACATCGGGCGTTGTCACCGTTTGGGTGTGACTAGTACAAAACCGAGGCCAATCCTTGTAAAGTTCAAGGACATTTCTACCAGGGACAAAGTGTGGTCCAGCAAAGTCTGTCTCAAAGGAACAGGTATTACTTTGTCCGAATTTCTAACAAGAGATCGACATCTGGCGTTTATTGAGGCACGCAAGCGTTTCGGCGTCACGAAGTGCTGGACAAGAGACGGGTACGTGATTCTTATCGCAGCTGACGGAAAGCATCGCATCATAAATATTTCGGAACTCGCCAACATCACGAGTACAGTGGCATCTTGCGATGAAGGCAACGATAGCAGAACGACAGCAGCTTTAAAGGAATCAACCTCGGTTAAAGCTAAGAGGTCCAATCGATTCCAAATATCTCATCCAAAGAAGAAACGGGGTCTTTGGTccgaaaaaaatttaaaagcaGCCATTTCAGCAGTACAATTAGAACTTATGTCTCAATGCGCTGCAGCTAAGATATATAATATTCCAAGACGAACTTTAAGGAATCATTTGAAATCCGGCATTACTTCAAAACATATGGGAAAACCTGCTACTCTCACTAAAAGTCAGGAACGTGAACTATGTCAAGTACTGAAAAGATTTGCTAAAACTGGTTTGCCTCTTACTTCAAAGTTTATAAGGGAGCAGGCTTTTCAATTCTGTGAAAGGCATGATGTCCAACACAAATTTAACCGCAAAATGGGAATAGCAGGATTCCAAATATCTCTTCCAAAGAAGAAATATAGTCTTTGGTCCGAAAAAGATTTAAAAGCAGCCATTTCAGCAGTACAAATAGAACTTATGACTCAACGCGCTGCAGCTAAGAAATACAATATCCCAAGGCGAACTTTAGGGAATTACTTGAAATCCGGCCTTACTTCAAAGATTATGGGAAAAGCTACTACTCTCACTAAAAGTCAGGAACGTGAACTATGTCAAGTACTGAAAAAAATTGCTAAAACTGGTTTGCCTCTTACATCAAAGTTTATAAGGGAGCAGGCTTTTCAATTCTGTGAAAGGCATGATGTCCAACACAAATTTAACCGTAAAATGAAAATTGCAGGTACCACCTGGCTTAATCATTTTCTTAAGCGCAATCCATCAATTTCAACGCAAATACCCCCTAAATTATGA
- Protein Sequence
- MILRSTAEVVMVLGLGYKNQPLGYKTHVKLQNAEKYRKRHTYGENAFENLIISGITSENVQDNGSDDDVIEVVRDEAPIEIISDDEEFEREKTQQTQHSTIIQNFHFTSIPAATDSLIKDNEDVTDMADPLRNSKVNCGEIINSLIPPVEESSVPNIVMESVIKSTDFLSNHENNDENVFVNVTDDCNMNVCNDPLQLEVNNPESQVDDVNEKSMDCMNKAEVPSKIDDFGADPFYELPENHVRETLINVFEGPYEDEDIKPLLDDINIPDEGNTVKPSGAPSAAVSIPGLATEFRAFKDFVIKALDMLRTQVALLSRQQDDLEMRGRRKILLIHGVAEQDAEDVVAVVADLATNRLKLPNFNSADIGRCHRLGVTSTKPRPILVKFKDISTRDKVWSSKVCLKGTGITLSEFLTRDRHLAFIEARKRFGVTKCWTRDGYVILIAADGKHRIINISELANITSTVASCDEGNDSRTTAALKESTSVKAKRSNRFQISHPKKKRGLWSEKNLKAAISAVQLELMSQCAAAKIYNIPRRTLRNHLKSGITSKHMGKPATLTKSQERELCQVLKRFAKTGLPLTSKFIREQAFQFCERHDVQHKFNRKMGIAGFQISLPKKKYSLWSEKDLKAAISAVQIELMTQRAAAKKYNIPRRTLGNYLKSGLTSKIMGKATTLTKSQERELCQVLKKIAKTGLPLTSKFIREQAFQFCERHDVQHKFNRKMKIAGTTWLNHFLKRNPSISTQIPPKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -