Basic Information

Insect: Ochlodes sylvanus
Gene Symbol: -
Assembly: GCA_905404295.1
Location: FR990125.1:11134963-11140415[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.19 16 6.7 4.7 2 21 192 211 191 212 0.94

2 15 0.29 25 6.1 0.5 2 23 463 484 462 484 0.96

3 15 0.21 18 6.5 0.1 2 23 563 584 562 584 0.96

4 15 0.081 7 7.9 1.9 1 23 592 614 592 614 0.98

5 15 0.22 19 6.5 3.5 1 23 646 668 646 668 0.95

6 15 0.00036 0.031 15.3 5.4 1 23 676 698 676 698 0.99

7 15 0.17 14 6.9 3.1 1 23 783 805 783 805 0.98

8 15 1.8 1.5e+02 3.6 1.5 3 19 863 879 862 883 0.93

9 15 0.17 14 6.9 0.4 2 23 890 911 889 911 0.97

10 15 0.02 1.7 9.8 0.8 1 23 977 999 977 999 0.95

11 15 0.01 0.9 10.6 1.1 1 23 1005 1027 1005 1027 0.96

12 15 0.0049 0.42 11.7 2.6 1 23 1117 1139 1117 1139 0.97

13 15 0.00012 0.011 16.7 1.4 1 23 1145 1167 1145 1167 0.99

14 15 0.32 27 6.0 1.5 1 23 1260 1282 1260 1282 0.97

15 15 0.027 2.3 9.3 3.7 1 23 1293 1315 1293 1315 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.19	16	6.7	4.7	2	21	192	211	191	212	0.94
2	15	0.29	25	6.1	0.5	2	23	463	484	462	484	0.96
3	15	0.21	18	6.5	0.1	2	23	563	584	562	584	0.96
4	15	0.081	7	7.9	1.9	1	23	592	614	592	614	0.98
5	15	0.22	19	6.5	3.5	1	23	646	668	646	668	0.95
6	15	0.00036	0.031	15.3	5.4	1	23	676	698	676	698	0.99
7	15	0.17	14	6.9	3.1	1	23	783	805	783	805	0.98
8	15	1.8	1.5e+02	3.6	1.5	3	19	863	879	862	883	0.93
9	15	0.17	14	6.9	0.4	2	23	890	911	889	911	0.97
10	15	0.02	1.7	9.8	0.8	1	23	977	999	977	999	0.95
11	15	0.01	0.9	10.6	1.1	1	23	1005	1027	1005	1027	0.96
12	15	0.0049	0.42	11.7	2.6	1	23	1117	1139	1117	1139	0.97
13	15	0.00012	0.011	16.7	1.4	1	23	1145	1167	1145	1167	0.99
14	15	0.32	27	6.0	1.5	1	23	1260	1282	1260	1282	0.97
15	15	0.027	2.3	9.3	3.7	1	23	1293	1315	1293	1315	0.98

Sequence Information

Coding Sequence: ATGGGCGTCCAATACACAGATCAAGAAATGATTGCCTGTAACAGCGATTCAAACGATGCAGCGTCCTCTGAAACTATAGTAATAAAAGATGATACATATAAATCACAAAATAGTCATCACACACCTTCATCGGATGAAATTAAACACAAACAAAACAAGAAACCACCGAGACCTATACCTCAGCTTATACCATTAAATACTTCGACTCCAACTCAGACCAAGCCCAACTGTGGAGAGCCACCTGCTAAAAAATTCAAGGAATCGCCGATATCTAACCCTGCAGATTTAAGTACTAAGAAGTATGACCATCTTCCAGTCGACATTACCTTAATACCTGTAAGTAATGCCTCCTTAAAAGACACAACAGCAGTACGAAAGAAAAATGAATCATCATTCTTCGATCGGCTTAAAGAAAGACTGTTAACCGAAACTGGTGAAGAAGGTTCGCTGATATGCAAAAACTGCGGCTTCGAAAGCAAATGTTTATCTGAACATTCTGTACACGAAAAAAATTGTACACCACAAGGAAATCGCATATTGACCAACGCTTTGCTTCCAACTTTAAGCTCAACCCGGTGTCAACATTGCAGACATCGATGCAAGTCTAGTGCAGACCTATACATTCACATGCAAAGTTGCGGTAAAAATGAATCTGTATCGAGTGAACAAAATTCTGAAACATTAAACCAAGACAGCAATGAAACTGAAGCTCCGAACGAAGAGAAAGAATCGGAACCCCACCCGATGGAAAATGTTGTTTTTGTATGGAATAACATCAACCAAGAAACGCGTAAGTTTGACACACCACTCGATATCAGTATCAACGATGACTCGACCCTACCTGAAATCAACAAAAATCTCGAACTTGAAATTATCGACGATAATGACGGTATGAATTTATCACCTAGCCAAGCTTTAGGGAAGAAAGTTTTTAAATGTCCATATTGCATGTTTTGGGCGTCGACTGCATCAAGATTTCATGTTCACATAGTAGGACATTTAAATAAAAAACCTTTTGAATGCTCCCTATGTAAATACAAATCCAACTGGAGATGGGACATAACAAAGCATATTAAGCTTAAATCTGCTAGAGATCCTTATCATGCCGATGCAAAAGTACATATGACGGATGAAACAGGTAGAAGAAATTATACTAAATATAATAAATTTTTAGCGATGCCTATTACAAATGAAAACGGAGAAAACGAGTTTCAATACATGGATTCCAATACTTCAGTCGACACAGCATTAGATTATGAACAAGACAATGAAAAAAATAATTCTATGAATTTAACTCTAGAAATACACCCACTCAACCTGCAAACTCAACAAACGGAACTTAAAAATTATATCCAAGATATTAAAAAACCTAAGAAGACGTTATGGAAATGTAAGAAATGCAATTATAAAGATACGTCAAGAGAAGCACTGTTGGAACATGTGCGAGGACATTCTAAGCCTACGGACATATTGGAGGAGCCAAAAGCTACCTCTAACAATTCAAAAAGGCCTGAAAATGCCCCAGACCCTGCAGATTTGGCATACCGATGCGGCCATTGTAACCAACTTTCCAACTGGAAGCACGTCATACAGAGACATTGCCGACTGAAACATGCAGGCGTCATTAAAGTTATAACAACTGTTAAGCCAAAACCAAACACAATATTTAATGAGATAATAGGCGACACATGCCCAACGTGCCCCTTTAAATCTGCTGATAAGAATGTATTCATGGCGCATATACAACAACATCAGCCCTCGCCACAATCTATATTCAAATGTTATTTTTGTCCATTCTTTGTAAAGGATGAGCATGAGTTGGTACAACATTTGAATTTACACGGTATTGACGACCCGGAAGATTACATTGCGAAAGCCATGGGATGTAAATCTCCATTACCAGAAAGCGGACATAATCCACATTCCGCCAAACGGCACAGGTGTACTGAATGTCCATATGAAACAAACAGCAAATCTCAATATTCATATCATGAACAATTCCATCGTCTTCCAGCCGACACTCCATACAAGTGTCAAGAATGTAATTACAGTGTTTCCAAAAGACACCTTCTTCATCAACACATGCGAGTTCATGGAATCTTTTCAAAGAAAAGCGAAATGGAAAGTGAATTGGAAGCGGAATGTTCACCCCAAAACTCTGAAGATGTAAGACCAGAAAATTCGTCAAGCTTAGATGAAATTCCATATGTATGGGTATCGGCGAAAAATGAATTTCATAAAATGTATAAGTGTCGATACTGTTCTTACGTAAATTCTCAAAAATGCAAAATACCTAACCATGAGAAAATTCATTGCATAGTTTTTGAGAATAGTGAAGTAACCATTTATAAATGTTTAGAATGTAAATTTACTTGTGATAATAAAGGACGTTTAGCCGAACATTCAAAAAGCCACAGTGAAATATATGGTCGCATATACTGCCCAGTCGAGTCTGATGTTCCAGATGATGAACAAATAGCAAAATTACGTGCAGTAATAGAACAGGAAAAGACAAACATCACCGAAGAGACAATAAAGGTAGAAGGGACTGGAATAGAGCTTAAAGAAACTAAAATTCTCAGTTTCTGCCAAAAATGTCCGGCTCGATTCTTTTCAGACAGTGAATTGAAATTGCATGACAAATTTCACGATTTAACGTTTGCAAATAAATGTAAACGTTGTGCATTCTCAGTGCCAAGTGAAACAGAGTTAACTTCCCACATGTTTGTCCATTCTGATGAGTATCATACAAAAACAAAAATGCTTAAGTTCATACATAATGTTGATCCCGCTCATAGAGAACCTCGTTTGGAATCCGCTCATGATCCCACCACATCGGAAGTGTCATGGATTGTTTCCAATCCCGGCAAAAACTCTTTTGACATTAATATTAAAAAGAATTGTGATTCTAAACATGTGCCAAAACAATATTTTTGTAAAGAATGTCCCGCAAAATTCTTTAAAACTTCAGCTTTAAGTTACCACATGGGATTGCATGGAAGTGATGCAGAACACAAATGTAAGAAATGCAGTTATGCCGTTAAAAATATCGGTAACTTAGCGAAACACGAATTGTTGCATGAGAATGAGGGAAAGAATTCGACTTGCGATTATGAATCCGGTGAAGACTTAGACTACAAGAATATACCGCTATCTGGGACAGATCTATTTCAAAGAAAGACGGAAGCTCAAAAAAGAGTTTTAACTGATAAAGACAAACTAGTAAAACCAAATGATCATTTCCCACCCGTGCTACAAGCAGACCCACAATTTGGGTATTTAATGCATGGGAATCCAGAATTTATTTATCCTACATATTTAAAGAATGGAAGACAAAAAGAAAAGCGCTATAAATGTCATAAGTGCCCATCGGCTTTCGAAAAAAGGGAGCAATACAAAATTCACTTATCTCTGCATGGATCCAAGCAACGATATAAATGTGAACTTTGCGATTATTCTGTTAAGTATTATGCTAATTATGTTCAGCACATGAGAAAACATCAAATGAACGATGAAGCACAAGCTGAAAGGAAAAAAGAAAACAACGGGATTGCAGATTTAGATGTGGAAAACCAAGAAAATAAACAAGACGACACCGGTGATAATATTAAACTGGCTATAAAAACAATGCCTAGGAGACTTCCAAAATCGGACTTCCAACAATTCTCTATAAGTGACCAACAAACTCTTCGACTGCTACAGCGGCGACATTCTGGAAATAACTTAGGAAAAGACACTAGCGCAACAGAAACATCGCCTTTAAAGGATCGTAAGTTACACGTGTGTCTTCTGTGTCCGTATACAAACCAGCGGCAAGATGCTCTATCAAATCATTACAGGAGGCACGAAGACACTGACAATGTTAATGCAGCACAGCACAAGTGCTCTTTCTGCGATTTGGTTGTAATACAATCTCACTTCTTAAGAGAACATTTGAAATCTCATTTTAATTATCAAAAAAATCTTATTCCTGAATGTTTCTTGGCCAATGAAGATGTAAGTTTTACAATTACGAAGGTGGATGAAGCGGATAATGTGTCTAGTGATCTCAAATTAGATATGCAAAATAAGGTTAATTTAAGCAATGAAGATAAGATATTTGTAAAAATTAAATCTGGAAAACTGGCTGTAGATGAGTAA
Protein Sequence: MGVQYTDQEMIACNSDSNDAASSETIVIKDDTYKSQNSHHTPSSDEIKHKQNKKPPRPIPQLIPLNTSTPTQTKPNCGEPPAKKFKESPISNPADLSTKKYDHLPVDITLIPVSNASLKDTTAVRKKNESSFFDRLKERLLTETGEEGSLICKNCGFESKCLSEHSVHEKNCTPQGNRILTNALLPTLSSTRCQHCRHRCKSSADLYIHMQSCGKNESVSSEQNSETLNQDSNETEAPNEEKESEPHPMENVVFVWNNINQETRKFDTPLDISINDDSTLPEINKNLELEIIDDNDGMNLSPSQALGKKVFKCPYCMFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPYHADAKVHMTDETGRRNYTKYNKFLAMPITNENGENEFQYMDSNTSVDTALDYEQDNEKNNSMNLTLEIHPLNLQTQQTELKNYIQDIKKPKKTLWKCKKCNYKDTSREALLEHVRGHSKPTDILEEPKATSNNSKRPENAPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHAGVIKVITTVKPKPNTIFNEIIGDTCPTCPFKSADKNVFMAHIQQHQPSPQSIFKCYFCPFFVKDEHELVQHLNLHGIDDPEDYIAKAMGCKSPLPESGHNPHSAKRHRCTECPYETNSKSQYSYHEQFHRLPADTPYKCQECNYSVSKRHLLHQHMRVHGIFSKKSEMESELEAECSPQNSEDVRPENSSSLDEIPYVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIVFENSEVTIYKCLECKFTCDNKGRLAEHSKSHSEIYGRIYCPVESDVPDDEQIAKLRAVIEQEKTNITEETIKVEGTGIELKETKILSFCQKCPARFFSDSELKLHDKFHDLTFANKCKRCAFSVPSETELTSHMFVHSDEYHTKTKMLKFIHNVDPAHREPRLESAHDPTTSEVSWIVSNPGKNSFDINIKKNCDSKHVPKQYFCKECPAKFFKTSALSYHMGLHGSDAEHKCKKCSYAVKNIGNLAKHELLHENEGKNSTCDYESGEDLDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKENNGIADLDVENQENKQDDTGDNIKLAIKTMPRRLPKSDFQQFSISDQQTLRLLQRRHSGNNLGKDTSATETSPLKDRKLHVCLLCPYTNQRQDALSNHYRRHEDTDNVNAAQHKCSFCDLVVIQSHFLREHLKSHFNYQKNLIPECFLANEDVSFTITKVDEADNVSSDLKLDMQNKVNLSNEDKIFVKIKSGKLAVDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01438518;
90% Identity: iTF_01439522;
80% Identity: -