Basic Information

Insect: Ochlodes sylvanus
Gene Symbol: -
Assembly: GCA_905404295.1
Location: FR990150.1:4820281-4835117[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2 1.7e+02 3.5 0.5 1 9 235 243 235 257 0.82

2 14 0.0029 0.25 12.4 2.7 1 20 313 332 313 334 0.94

3 14 0.85 74 4.6 1.8 1 23 350 373 350 373 0.96

4 14 0.018 1.5 9.9 0.2 3 21 412 430 410 431 0.92

5 14 0.55 48 5.2 2.7 1 23 788 811 788 811 0.97

6 14 6.7 5.8e+02 1.8 0.2 1 23 816 838 816 838 0.89

7 14 0.21 18 6.5 0.8 2 23 860 880 859 880 0.81

8 14 0.23 20 6.4 2.3 2 23 946 967 945 967 0.93

9 14 0.76 65 4.8 1.7 2 23 983 1004 982 1004 0.95

10 14 2.3e-07 2e-05 25.3 4.7 1 23 1010 1032 1010 1032 0.99

11 14 0.0002 0.017 16.1 5.0 2 23 1038 1059 1037 1059 0.97

12 14 0.85 74 4.6 1.7 3 21 1067 1085 1065 1088 0.92

13 14 0.79 68 4.7 0.1 3 20 1097 1114 1096 1118 0.94

14 14 0.016 1.4 10.0 0.1 3 23 1127 1148 1126 1148 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2	1.7e+02	3.5	0.5	1	9	235	243	235	257	0.82
2	14	0.0029	0.25	12.4	2.7	1	20	313	332	313	334	0.94
3	14	0.85	74	4.6	1.8	1	23	350	373	350	373	0.96
4	14	0.018	1.5	9.9	0.2	3	21	412	430	410	431	0.92
5	14	0.55	48	5.2	2.7	1	23	788	811	788	811	0.97
6	14	6.7	5.8e+02	1.8	0.2	1	23	816	838	816	838	0.89
7	14	0.21	18	6.5	0.8	2	23	860	880	859	880	0.81
8	14	0.23	20	6.4	2.3	2	23	946	967	945	967	0.93
9	14	0.76	65	4.8	1.7	2	23	983	1004	982	1004	0.95
10	14	2.3e-07	2e-05	25.3	4.7	1	23	1010	1032	1010	1032	0.99
11	14	0.0002	0.017	16.1	5.0	2	23	1038	1059	1037	1059	0.97
12	14	0.85	74	4.6	1.7	3	21	1067	1085	1065	1088	0.92
13	14	0.79	68	4.7	0.1	3	20	1097	1114	1096	1118	0.94
14	14	0.016	1.4	10.0	0.1	3	23	1127	1148	1126	1148	0.97

Sequence Information

Coding Sequence: ATGTTGGAAAATAGCAGAAAAAGGGCTAGGAAGTCCAAGTTGGAGGTCAGAGAAGGCGTAGAGTTAGAAGAAGCTACAGTTTTGTATATGGAGACAATTGAAACCAAGGTGAAAGATGAACCAATGATTGACATTGGACCTACTACACTACTTGGTAAACATAAACTTCTTCGAGACCCATTCAATGATGTAAATGACATAGCCGTGCCTACAGTTGACCATAAGCCAAAGATGGAGTTCTGTGTTAAAATAGAAGTGGAGGAATTTGATGAGGCAGAGTGTAAAGAAATACAAGACGCAAATGATAAAGTTGAAACAAATAACGTAACCATTGCTAAAGATAACGATTCAAAAAGTTCGAATTGTGCTACAACAAGTGGTGAACAAGTTAAACCTACTATTAGTAAAAGTAATGCAATAACTGTTAAAAAAGTTAAAATAGATACTAAACAAAATTGTGTTTCTAGTAATCAATTTAAGGAATATGTCACAAACAGACCTATAATGCTGAACATGACTGAACGACTGCTTAAATCTGATCAAGCCGTAGATAAAATACTGGCAATTGGAGTAAGAAATTATTGTGGGAGAATACTAGATGAACCAGTGAAGGATCCAAGAGATATGCTGTTATACAAGGCCTTGGAGGACTGGCAGTTCTGGCATCAAGAACATTCGGCTGTCCGAGACATCCCGTTAATCTACAAATGCTATATTTGTGGAAAAGCGTGGTGGTATTTTTATGATTTCAGGGAGCATGTAGATTTACATACAAAATTGAAAAATTTTGAAGTTTCACTAGAAACAAACAACGATGAATGCTGTTTGATCTGCTTCCAGCTGGACACAATCTACAATGACGTTGAACTGCCCAAGACTAACTGCGTTCGATGCGAGAAAGCGTCAGAATGTCACGCGTTTGTTGATAACGATCCTTACAAGTGTTTGGGGTGTAAAACGACATTCTCCACGTGTACACAACTAAAATTGCATGAAAACCAATGTCCTCAGTACAGAAAAAAATTCTTTCCTGATAAATCTGTTACACATAAATGCAGTATTTGTATCATTGAATGTATGACAGAGGAAAGTCTCAATGATCATATGATTCGGAGACATTCAGTTCGATCTGATGAAGTAACGGCATGGGATCTCAAAAAATGTAGCGTATGTTCACGATCATATATCCTTATGGCTTTGCACATATGCATAAGGAAAACGAATAACTATGGATGCAATTATTGTGGGAGAAGTTTCCAGAAAAAGGTGTATAAGGAGATTCATATGGCTAGCTATAGCAAGGAGACTGAGTGCAGGTTATGCGGCAAGTCATTATTGGCGAGCTGCATGGAACATAGCCATATGCTGCAACATTCAGACAGATATGCACTGATGTATAAGTGCATTCAGTGCATAGAAGGAAGGTATTATCCGGATGAATTCTCAATTATACATCATACGAAAATTGTCCACAACAGACCGTTTGAGAAGAAATTTAAATATTTGGAAATGGTAATATTACCAAAACAGAGCCTAGAAATGTCTTCGAAAACGGCACAAGTTTCTCAAGCAGGTAAAACGAAAAGAGGAATCGCAAAAGATATAGCAAATTCGAAAATATTCGTGCCGTCAACAAAATATAGGAATACCCACAAACAACTGGAGACGCCGTTGGACGTGGTGGTGAAGCAGGAGCCCGAGAATGATATGGACATTGATACTTTGTGTGTCACCGACCTGTCCAGCATCAAGACTGAAGCGGTGGACGAGTCGTCACCACATATCAAGATTTCGGATATCACTAGTTTGCAGGACTTGATGACATTGAAAACGGAGCCAAGTGAAGAGTTGGAGGGTGAGGACCTGGTGATCATCGAAGACAAGGTGCAGCCCATCGAGCTGTACTCCAGCGAGGATAGTGACAACGATTTCAGATTGAAATACACCGGCAGAAAGAGGACAAAGTTGATGCGTCTCACCTGCATATGTGGCTACGTGGACATCCGCAGTCGGATGAGGGCCCACAAGCTGGGCTGCACCGTCACCCAGGCCAAACGGGCGGCGAAGGAACTGGCCCGGCTCAATGGCGTGAGCAACGATGATGAATCGGACGCTAGTGATGACTCGGACAAGGAACGCGGTGATGGGGACGGTGATGAGCGCACCCAGCGGAGCAACAGTGATGAGGAATGGGAGGAGGGGGTGCCTCTCGAGAAGCGGAATAAAAGCGGTCTGCGCTACACGTGCCACTGCAAGAGAGTGTTCTCGGGCACCCTGGCAGCGTTCAGACGCCACAAGAAGGCGTGCGCCGTCGCCACCAAGCTGAAGCAGCAGACGAAGGCCTCCAAGCGGCTCGTGGTGTATCCCTGCACGAAGTGCGGTGACGGGTTCAACAGCCTCCTGAGATACTGCAAGCATTTGAACCGGACCCACTACTTCCAGAAGTACATGTGCCCGCAGTGTCTCCACACCGCGGACGGGCTCGGCAAGCTGACCAGCCACGTGACCGCCCACATCAGCAGGAGCTACGTGAAGATGAGGATCATCTCGGAGACCCAGGAGTGGTCCAAGTGTAATAAGTGCAAAGTGTGCAACAAGCCCGTGGACAGGCAGGACTATTTCAAGCATTGGGAGTCTCACCTGATCCTGAACCCCGGGGACAGTGCCCGAGGGCGGGACAGCGACAGCCAGCCGGATGAAGAGAATCTCGTGATAGCGGAGCCCGAGTCCCCGCCGGTGGTCGCGCACGGGAAGCGGATCTATTCGGCCGAGGTGATGCAGCGGGCGTTGGTGTGGCTCCAATCGCCGAACGGGCACGGCCCGGTGGACGAGAAGACGTGCGTGTTCTGCTCGCGGCGGTTCACGCGCAAGAACGACAGCAAGCGGCACGTGATCGAGCACCTGTTGCAGGACGCGTACGCGCACCGCGTCGAGAACAAGGCGCTGCGCTGTCAGATCTGCATGCTCGGCTTCCCGAAGGACGACCGGTTCAAGCACCACATGCGCGAGCACGCGTGCCTGCCGGTGTACCAGTGCAACCTGTGCGGCAAGTCGTTCAGCGACTCGAGCAACTTCTGCAAGCACCGCAAGGTGCACGGCCTGTCGCTGATGCGGTGCACCGTGTGCGACAAGAAGTTCCACAACTCGAACCATCTGGACCGGCACATGGAGATGCACGAGAAGACGAAGCCGACGATCTGCGCGGTGTGCGGCAAGGTGTCGTACACGCAGTCGGCGCACAAGAAGCACGTGCGCTGCGTGCACGAGCGGCACAAGTCGCGCTCGCTGTGCCCCATCTGCCGCGCGGGGTTCACGCGGCTCAAGGACAAGTGGGACCACATGTGGCTGGTGCACAAGGAGCGCAAGTTCAACGCGGACTGTCCGATCTGCTCGGACTCGTTCCGCCGGTTCGCCGACGTGAAGACGCACGTGCGCGTCGCCCACAACCGCAACGTGCGGCTGAGCGCCGACCGACGGATGGTCGTGTACGCCGGGCCCGCGGCAACCGACAAGAGTCCGTCGCGGCCGTAG
Protein Sequence: MLENSRKRARKSKLEVREGVELEEATVLYMETIETKVKDEPMIDIGPTTLLGKHKLLRDPFNDVNDIAVPTVDHKPKMEFCVKIEVEEFDEAECKEIQDANDKVETNNVTIAKDNDSKSSNCATTSGEQVKPTISKSNAITVKKVKIDTKQNCVSSNQFKEYVTNRPIMLNMTERLLKSDQAVDKILAIGVRNYCGRILDEPVKDPRDMLLYKALEDWQFWHQEHSAVRDIPLIYKCYICGKAWWYFYDFREHVDLHTKLKNFEVSLETNNDECCLICFQLDTIYNDVELPKTNCVRCEKASECHAFVDNDPYKCLGCKTTFSTCTQLKLHENQCPQYRKKFFPDKSVTHKCSICIIECMTEESLNDHMIRRHSVRSDEVTAWDLKKCSVCSRSYILMALHICIRKTNNYGCNYCGRSFQKKVYKEIHMASYSKETECRLCGKSLLASCMEHSHMLQHSDRYALMYKCIQCIEGRYYPDEFSIIHHTKIVHNRPFEKKFKYLEMVILPKQSLEMSSKTAQVSQAGKTKRGIAKDIANSKIFVPSTKYRNTHKQLETPLDVVVKQEPENDMDIDTLCVTDLSSIKTEAVDESSPHIKISDITSLQDLMTLKTEPSEELEGEDLVIIEDKVQPIELYSSEDSDNDFRLKYTGRKRTKLMRLTCICGYVDIRSRMRAHKLGCTVTQAKRAAKELARLNGVSNDDESDASDDSDKERGDGDGDERTQRSNSDEEWEEGVPLEKRNKSGLRYTCHCKRVFSGTLAAFRRHKKACAVATKLKQQTKASKRLVVYPCTKCGDGFNSLLRYCKHLNRTHYFQKYMCPQCLHTADGLGKLTSHVTAHISRSYVKMRIISETQEWSKCNKCKVCNKPVDRQDYFKHWESHLILNPGDSARGRDSDSQPDEENLVIAEPESPPVVAHGKRIYSAEVMQRALVWLQSPNGHGPVDEKTCVFCSRRFTRKNDSKRHVIEHLLQDAYAHRVENKALRCQICMLGFPKDDRFKHHMREHACLPVYQCNLCGKSFSDSSNFCKHRKVHGLSLMRCTVCDKKFHNSNHLDRHMEMHEKTKPTICAVCGKVSYTQSAHKKHVRCVHERHKSRSLCPICRAGFTRLKDKWDHMWLVHKERKFNADCPICSDSFRRFADVKTHVRVAHNRNVRLSADRRMVVYAGPAATDKSPSRP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -