Basic Information

Insect: Ochlodes sylvanus
Gene Symbol: -
Assembly: GCA_905404295.1
Location: FR990149.1:8164865-8174588[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.011 0.9 10.6 1.9 1 23 247 270 247 270 0.95

2 8 0.53 46 5.3 7.7 1 23 277 299 277 299 0.98

3 8 0.00097 0.083 13.9 3.6 2 23 331 352 330 352 0.98

4 8 0.0003 0.026 15.5 0.1 1 23 356 379 356 379 0.97

5 8 2.3 2e+02 3.3 0.4 2 20 396 414 395 416 0.91

6 8 0.16 13 7.0 4.0 2 23 483 505 482 505 0.87

7 8 0.001 0.088 13.8 4.3 1 23 542 564 542 564 0.96

8 8 9.6e-06 0.00082 20.2 2.1 3 23 572 593 570 593 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.011	0.9	10.6	1.9	1	23	247	270	247	270	0.95
2	8	0.53	46	5.3	7.7	1	23	277	299	277	299	0.98
3	8	0.00097	0.083	13.9	3.6	2	23	331	352	330	352	0.98
4	8	0.0003	0.026	15.5	0.1	1	23	356	379	356	379	0.97
5	8	2.3	2e+02	3.3	0.4	2	20	396	414	395	416	0.91
6	8	0.16	13	7.0	4.0	2	23	483	505	482	505	0.87
7	8	0.001	0.088	13.8	4.3	1	23	542	564	542	564	0.96
8	8	9.6e-06	0.00082	20.2	2.1	3	23	572	593	570	593	0.97

Sequence Information

Coding Sequence: ATGGATTTGAAAATATGCAGAATTTGTCTCCGGACAGAGGCAAAGGTGTACAAAATTGATAGATATCATCTGAAGTCTTATTATGAAGAAGTTTTAGCTTTGAAAGTAAATGATCAGGACGGTCTACCTCACTACTTTTGTTACGAATGTGCGATGATGCTTCACAAATTCCATAAGTTCAAGGAGAAATGCTACACTGGTCAGAAGCTGCTGAAAGAAATGCTATGGAAGGGTCCTATTTCTTACGAGGCCATATACAAGATAGACAGAACTGATTATGGTCTCCAATCATTTATAAGTCCGAGCACAGCAGACAGAGTTAAGCTTTGTGTGTTTAATGAATCTGACGTGAAGCCGCGGGGTAAAGTCAATAGTACAATAGATACCGTAGATTTAGGCGCATCGTCCACAGAGGATGAATGTAAAGAGGAGTATCCTCTTTCTGATGGTATGAAGATGGAAGGGGATGAAGAATCGACAGATTCTAAAAATATATCCAAAAACACGGAGAATGAGATGCCACGTGTGGAAGTGAAGTTGGAGAAGGTGCCCAGGAAACGGCCCGCCGGGGCGGGGGCGAGGAGCAGGAGGAAGCATTACAACAGCGACGGTGAGGAGACCAACATCAAGGACCTGCTGCTGACCAGCGAGCATTGGGAGGTGGCCACCATGAACGAGGATGAGGCTGAGAAGGCATTTAAGGAAAAGGCAGAAGACAAGAAGTACATTGAGGCTCCGTACAAGTGCACCGACTGCTTCAAAGGATTTTCCAAGGAAATGATTATGAAGAGGCACATCAAGCTACGTCACAGTGAGTCGATCGGGAACTTCGAATGTCGTTTCTGTCACGTGCGGTACAAATTGGACTGTTACCTGAGGAAGCACATGCGGCAGCACTACGCCAAGTACAAGTGTTTGAGGTGCAGCTTGGTCTGCGATCTGGAGTACACAGCGTTTCTTCACAATGAATATCACAGCGGTGTCGTGAAGAAATGCGTCTACTGCGAAGAAGAATTCAGGCACTCGTCGACGTACTACTCGCACCTGCGGCGGCACCGCAGCGAGTTCGTGTGCGCGCTGTGCGGCGCCTCGTTCGTGAGCGCGGCCGGCCTGCACCAGCACAAGCGCGTCACGCACGCCCTCGACCAGCCGGAGGTCGAGGACGAGGACGAGGCGCCGGTGACGTACTGCGCGCGCTGCGACATCCGCTTCGAGACTGGCCGCGCGTACCGCGAGCACCTCTTCCACTCCGTGATGCACGCGGAGGAGGCCCCAGAAGAAATGGAAGATGGCGAAACGATGCCGAAGAAAATTCTTGGCAAGAAATTGCAAAAGAAGATCAGTAATGATCTCCAGCTGCCAGATATAAAAGAAGATACGACACCGCGCAACACGTACAAGAAGAAACAGTGGGGGAGGACGAGGAAGTGTAGCAAGATACCGACCACGTGTCGACAGTGCGGCAAGAGTTTCGAGACCCAAATGGCGTGCATGAAGCACCACGTGTCGGAGCACCCGCGGACGCCGTTCTCCACCGAGAGGATCATATGCGAGATATGCGGCGCTTCCTTGGCCCTGGGCAGCGTGTCGTCGCACCACAACATGCACACGCGCGAGGTGATGCACGCGTGCGGCACGTGCGGCCGCCAGTTCCACTCCAGCGTCAGCTACAAGCGGCACCAGCTGACACACACGGGGGCGAAGCCCTACGGGTGCACGTTGTGCGACAAGCGGTTCACACAGAGCAACAGTCTGAAGCTCCATTACAGAACATTCCACTTGAAGCAGCCCTACCCGAAAAGAAACAGAAGAAAGAAAACCGACATGAAGGAGCCACTGGAGCCCGCGGGCCAGCCCACCGACGAGGAGTCCGGGGACAGCCGCGGGCCGGCGGAGCCCCGGCGGGGGCCCGCGCCCCTGCAGCCCGCGCCGCCCGCCGACGTGCATTACCTGACGTTACAGTGA
Protein Sequence: MDLKICRICLRTEAKVYKIDRYHLKSYYEEVLALKVNDQDGLPHYFCYECAMMLHKFHKFKEKCYTGQKLLKEMLWKGPISYEAIYKIDRTDYGLQSFISPSTADRVKLCVFNESDVKPRGKVNSTIDTVDLGASSTEDECKEEYPLSDGMKMEGDEESTDSKNISKNTENEMPRVEVKLEKVPRKRPAGAGARSRRKHYNSDGEETNIKDLLLTSEHWEVATMNEDEAEKAFKEKAEDKKYIEAPYKCTDCFKGFSKEMIMKRHIKLRHSESIGNFECRFCHVRYKLDCYLRKHMRQHYAKYKCLRCSLVCDLEYTAFLHNEYHSGVVKKCVYCEEEFRHSSTYYSHLRRHRSEFVCALCGASFVSAAGLHQHKRVTHALDQPEVEDEDEAPVTYCARCDIRFETGRAYREHLFHSVMHAEEAPEEMEDGETMPKKILGKKLQKKISNDLQLPDIKEDTTPRNTYKKKQWGRTRKCSKIPTTCRQCGKSFETQMACMKHHVSEHPRTPFSTERIICEICGASLALGSVSSHHNMHTREVMHACGTCGRQFHSSVSYKRHQLTHTGAKPYGCTLCDKRFTQSNSLKLHYRTFHLKQPYPKRNRRKKTDMKEPLEPAGQPTDEESGDSRGPAEPRRGPAPLQPAPPADVHYLTLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00970838;
90% Identity: -
80% Identity: -