Basic Information

Insect: Ochlodes sylvanus
Gene Symbol: ush
Assembly: GCA_905404295.1
Location: FR990125.1:14461559-14469342[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0053 0.46 11.6 0.2 1 20 167 186 167 188 0.95

2 9 0.00051 0.044 14.8 1.2 1 23 224 246 224 246 0.97

3 9 0.11 9.6 7.4 0.2 3 20 277 294 276 296 0.92

4 9 0.019 1.6 9.8 3.9 2 21 535 554 534 555 0.95

5 9 0.0056 0.48 11.5 0.1 3 20 583 600 581 602 0.90

6 9 4.1 3.5e+02 2.5 0.0 2 23 630 651 629 651 0.93

7 9 0.0083 0.71 11.0 1.3 1 23 657 679 657 679 0.99

8 9 0.43 37 5.6 0.7 1 23 717 740 717 740 0.95

9 9 0.29 25 6.1 1.0 2 20 773 791 773 793 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0053	0.46	11.6	0.2	1	20	167	186	167	188	0.95
2	9	0.00051	0.044	14.8	1.2	1	23	224	246	224	246	0.97
3	9	0.11	9.6	7.4	0.2	3	20	277	294	276	296	0.92
4	9	0.019	1.6	9.8	3.9	2	21	535	554	534	555	0.95
5	9	0.0056	0.48	11.5	0.1	3	20	583	600	581	602	0.90
6	9	4.1	3.5e+02	2.5	0.0	2	23	630	651	629	651	0.93
7	9	0.0083	0.71	11.0	1.3	1	23	657	679	657	679	0.99
8	9	0.43	37	5.6	0.7	1	23	717	740	717	740	0.95
9	9	0.29	25	6.1	1.0	2	20	773	791	773	793	0.92

Sequence Information

Coding Sequence: ATGGCCATAAAGCAGCGGACGCTAGATAAATCCACACCTCAGCAAATGGACACGGCGCAACAGTCAGGGCGTAACCCGATAGCGGAATCGAACCCGCGATATGTTAATGCACGTCCGATCGTGAGTATCGTGACGCACGACGTACGTCCTGTCGCGGACACTTGCGAGAGATTACCGAGTGAGGACGAGGAATGGGGAAACGAGAGCGAAGCCATGCCGGGAGAACCTCGAACGCCGAGCTCTGGGGGAGAGCGGGCCGCGTCCAGCGGAGGCGCGTCGCCAGCTTCGGGAGGATCCCCTGCCGCTTCGCCACCGCGACTACGTCTTAACACTAGCCTTGCGACTGACCCAGCGCTCGCACCGCAAGCTACGTCGCTGAAACACGAACCTCCTTCTCCATCTCCGCCCCTGATTCCAGCGGCACCTCAAACCAGAGACTGCTTGCCGTTAACGGCTGCTTCTTTTCCGCCACTGTTTCCTGTAACAACTGCCCCTGGCTATACGTGCCAACCTTGCGGCATTAGATATTCTTCCTTAAGTACTTTACAAGCGCATCAAGAACATTACTGTTCGAAAAGAAGGCCGAAATCAGATTCTACAGAAGGACCGGCTGATACAGTCGATGATTCAAGTAGCGAAGCGAAGACACCGAGGCCTCCTGGGAAACAATTTGCTTGCACCTACTGTTCATACAGCGCAGATAAGAAACTAAGCTTAAACCGTCATATGCGCATGCATTCATCTTCACCTGTGAGCAGCGGAACTCCAGCTCCGACACCCACCTCTAATGGCGAGAGCGCAGACGTACCAACATCGCAAGATCGGTATTGTGTAGACTGCGATATACCCTTCAGCTCAGTAAAAACGTACCGGGCTCACAAAGCTCATTATTGCAATACTAGGCAAGTTGTCAAACAAGTCTTGGCTGCTGCCCGAGGAGGCTCTGCCACATCAGGGTCTGCGCCTCCTTCTCCTGGTGCTACCCCACCGGCTCAAAACCAATATGCGATAGCATTACCGACTAACCCAATTCTCATAGTTCCATATTCTATACTACGAAGCGCCAGCACCCTACCTGGAACGACACTACCAGATCCGGATACGCCATGTTTTTTGTTACCAAATGGAACTTTCCAGCCTATTAGCCGGAGCTTGCTCTTAAGTACGGAAGGAAAGGAACCGGAAGTATTAAAATCTGCGAACCGGCCGCGGGAACCGTCACGTGATGGTGCAACACCATTGGACTTGAGCGTTCGTCGTTCTCCTGAATCTGTAACGACCGATGACCACGAGAAAGAAAATAGGATAAGGTCAGCGACACCAGAACAGATAGTTTGTGCGCCATCGCTTCCCGGCTCCCCAGGGACTCCGTCACCTTCGAGGCGATCATCGTCACCCGGCGGAGAATGTTCACCAAAAAGAAGACGACGCAACTCTAGGGGCCCTACCCCTAAACCTCCGAGCGTACCTTCGCCGCCAGAAGAAAAATTCACACCGGTGGTGCCACCCCCGATCCTGCCACCTGCACTCGCCCTACGCCTGGCTTCGGAGCTGCCCGTTACGGCCGTGACTCCTCAAGTTTTAGTTAAGCAAGGAGTTTCGAAGTGCAAGGAATGCAACATCGTGTTTTGCAAGTACGAAAACTACCGAATACACAAGCGGCATTACTGCTCAGCTGGCGGCGAAGAGAGAGCGAGTCCGGCCCCTCCCGAGCCCGGACCGCCGCCGCAATACCGTCAGCTCATATGCGTGGCGTGCGGGATACACTTCAGCTCGCTCGACAATTTGACTACCCACCAGTCATATTACTGTACGAAAAGAGAAACGCGATCCCCAAGAAGTGTGCCAGAGATTCCGCGGCCATCGTCGGGCTCCGAGGGGGGATGGAAGTGCCCATGCTGCGAGGTGGTGTCTCCAACAGCTGCGGCCGCCCAACGCCACATGGAAGCCCATGCCGGGGTGAAAGCTTTCCGCTGCACCATATGCCGATATAGAGGGAACACCCTGCGGGGTATGCGCACCCATATACGCATGCACTTTCGAGAAAAACCTGCTGATTTACAGGAGGAGAGCTACATTTCGTGTGTTGTGGAGGAAGACAATCGCGAAGCGACGTCCCCGAGCCCAGCGGTGGGCGGCGAGAGGGTGCACCGGTGCGGCAGCTGCGCCTACACGTCCACGTACCGAGGCAACGTGGTCAGACACGCGAGGCTCGTCCACGCCACCGAAGACCCCGAGCCCGAGGAACAGATCTCCCCCGTCCCTCCTATAGACATCAAAAAAGAACCAGAAACTGAGGCCGAAGAGACCCCCAACTACTGCAAGTCTTGCAACATATCCTTTAAATACGTTAACACGTACAAGGCTCACAAGCAGTTCTACTGCAGCGCCGCCAACCAAGAAACTGCGAATAACAATGTCCCGCCGCCGAGGGTCAACGACGCGCCTGTCCTCTGA
Protein Sequence: MAIKQRTLDKSTPQQMDTAQQSGRNPIAESNPRYVNARPIVSIVTHDVRPVADTCERLPSEDEEWGNESEAMPGEPRTPSSGGERAASSGGASPASGGSPAASPPRLRLNTSLATDPALAPQATSLKHEPPSPSPPLIPAAPQTRDCLPLTAASFPPLFPVTTAPGYTCQPCGIRYSSLSTLQAHQEHYCSKRRPKSDSTEGPADTVDDSSSEAKTPRPPGKQFACTYCSYSADKKLSLNRHMRMHSSSPVSSGTPAPTPTSNGESADVPTSQDRYCVDCDIPFSSVKTYRAHKAHYCNTRQVVKQVLAAARGGSATSGSAPPSPGATPPAQNQYAIALPTNPILIVPYSILRSASTLPGTTLPDPDTPCFLLPNGTFQPISRSLLLSTEGKEPEVLKSANRPREPSRDGATPLDLSVRRSPESVTTDDHEKENRIRSATPEQIVCAPSLPGSPGTPSPSRRSSSPGGECSPKRRRRNSRGPTPKPPSVPSPPEEKFTPVVPPPILPPALALRLASELPVTAVTPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGGEERASPAPPEPGPPPQYRQLICVACGIHFSSLDNLTTHQSYYCTKRETRSPRSVPEIPRPSSGSEGGWKCPCCEVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFREKPADLQEESYISCVVEEDNREATSPSPAVGGERVHRCGSCAYTSTYRGNVVRHARLVHATEDPEPEEQISPVPPIDIKKEPETEAEETPNYCKSCNISFKYVNTYKAHKQFYCSAANQETANNNVPPPRVNDAPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00288432;
80% Identity: -