Basic Information

Insect: Ochlodes sylvanus
Gene Symbol: -
Assembly: GCA_905404295.1
Location: FR990150.1:5830019-5844206[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00042 0.036 15.0 0.9 1 23 343 365 343 365 0.99

2 11 0.11 9.6 7.4 12.5 1 23 372 394 372 395 0.94

3 11 0.25 22 6.3 2.0 1 23 399 421 399 421 0.97

4 11 1.1 93 4.3 1.4 1 23 426 449 426 449 0.87

5 11 0.0067 0.58 11.2 0.4 1 23 453 476 453 476 0.94

6 11 1.1 96 4.3 0.3 3 20 490 507 489 509 0.90

7 11 0.011 0.97 10.5 1.1 2 23 549 571 548 571 0.96

8 11 0.27 23 6.2 1.3 2 20 587 605 586 608 0.87

9 11 0.00013 0.012 16.6 1.3 1 23 614 636 614 636 0.96

10 11 0.0015 0.13 13.3 6.8 1 23 643 665 643 665 0.97

11 11 0.00016 0.014 16.4 0.4 1 23 671 694 671 694 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00042	0.036	15.0	0.9	1	23	343	365	343	365	0.99
2	11	0.11	9.6	7.4	12.5	1	23	372	394	372	395	0.94
3	11	0.25	22	6.3	2.0	1	23	399	421	399	421	0.97
4	11	1.1	93	4.3	1.4	1	23	426	449	426	449	0.87
5	11	0.0067	0.58	11.2	0.4	1	23	453	476	453	476	0.94
6	11	1.1	96	4.3	0.3	3	20	490	507	489	509	0.90
7	11	0.011	0.97	10.5	1.1	2	23	549	571	548	571	0.96
8	11	0.27	23	6.2	1.3	2	20	587	605	586	608	0.87
9	11	0.00013	0.012	16.6	1.3	1	23	614	636	614	636	0.96
10	11	0.0015	0.13	13.3	6.8	1	23	643	665	643	665	0.97
11	11	0.00016	0.014	16.4	0.4	1	23	671	694	671	694	0.94

Sequence Information

Coding Sequence: ATGCGGTGTATCGTACCCTTTTGTAAGAATGAATCCAGACGAACATCGAAGTCTCAGGGCATTACCTTTCATTTATTCCCCACGGAACCTTCGATGCGGGCGGCCTGGCTCGAGGCGCTGGACAAGGAGGGCTGGGAGCCGCGCGAGCACAGTGCGGTCTGCTCGAACCACTTCCTGACGGACGACCTGTACGTCACCAGGAGTGGGCTGCGGAAGGTGCGCCCGGGGGCAGTGCCAATTGTTATGCAGGTCTGCAGAATATGTTTCGTGACTGACTGCCGGCTGTACCCAATGACGGTTTACAAGAATTTGTATCAGGCTTACGAGATTCTCACCGGATTTTCGATAGAGAATGAGCAGCACCTGCCGCCGTACCTGTGCGGCGAGTGCGCGCACCGGCTGCTCGGCTGCATCCACTTCCGGACGCGGAGTCTGCGCGCGCGCATGATACTGCAGGACATCCATAAGAAACACGATGTTATAACACTAGAGATGGTGAAGTCCATCAACCGCAAGCAAAACCAGCTGTGCTCGACCCTGGGCGTGACGCACTACGCGCCCGACCGGTACGACCTGGAGGTGGTGCACGAGGAGAAAGAGGAGCTGCTCGCTGAGGAGCAGGCCGACCTCAACGAATTCATGTCTTTGCATGAGGTCAACGTGTTGGACGAGATCAAATGTGAGAATGATGACATCCAGGATGGGCTCAACGACACCATTAAAGATGATGAGGTCAATGATGACTCGATCTCTGTTTACGAGGACACCTTTGTGGGCAAGGACTACTCATCAGACGACAGCCTACCCCTGAGTCGGAGCCAGAAGCCCAAGCGCAAGGGTCGGAAGGTGAAGAAGGTGGCCAAGGTGGCCAGGGACGTGACGCAGCCCAAGATCGACAGGCGACGGAAGCCGTTCTACAGCGGTGACGTCAACGAGACCCTGTTCACCGTATCCGACCTGACCGTGGAGGAACAGGTAGCGCAGATAGAGAAACGGCGGGATTCGGCGAACTATAAAAACTCGGCGTTCAAGTGTACCGTCTGTTACAAAGGGTTCCACGACGCGGACGCGTTCGCCGGCCACATGATGAGACATTCCAATGAGTCCGGCGAGCACGTGTGCACGATCTGCAAGACGCACTTCAAGCACGCGCACGCGCTGTGCAAGCACACGAACGCGCACCACATGCAGCGGTTCAGCTGCAACAAGTGCGCGTACGTCACCACGCACAGAAATTCGGCGAGACTGCACGAGCGATGGCACAAGGGGACGACGTATCAGTGTCCGCACTGTCGAGAGCTGTTCCTAAAAATCACAACGTACATGGGTCATATCCGAATCAAACATCCGTCGGACTTCGTGTGCCAGCTGTGCGGATATTCCTTCGTCAGCGAGAAGGGGATTGAGCTGCACAAGAAACTCAAACATCGACTGGAGAACACGCAGATACCAGAGGACGGACCGTTCTGCGAGCTGTGCAACGTGCGGTTCGTGTCCCAGGAGGCACACAAACGTCACGTCAGCGTCTCCGCCAAACACAACACCGGCGACAAACAGAATGGGCCCAAGCAGATCAAGTTGCGCAACGCGCCCCCCGCGCACCACGCCTCCAAGAAGTTCCCCGCGCTGCCGCCGGGGCCCATACCGTGCGAGCAGTGTGATCAACAATTTGAAAGCTCCCGCGCGTACCACGTCCACTTCAGACGGATGCACCCCGACAAGAATCGAACCAACTACCCGTCGATGAAGTCGCCGTGTATGTGTGAGGTGTGCGGCCGGATTTTCCAGAGCCACTCGATACTCAGGGACCACCGCTGGGTGCACACGGGCGAGCGGCCGTTCGCGTGCGACGTGTGCGGCAAGAGCTTCCGCATGCGGTCTCGGCTCGTCTTGCACCGCCACGTGCACAGTCAGCTGCGCAGCACGTACATGTGTTCGGTCTGCGGGAAACACTTCTCGTCGCACGCCAACTGCCAGCGGCACATGTTTATCCACACGGGCCTGAAGCCGTTCGAGTGCGAGATGTGCGGCAAGTCGTTCAAGAGCGTGACCGAGAAGCGCGCGCACATCACCTACGTGCACCTCAAGAAGCCAGAGCGTGGTGGAGGGTGCGAGCGAGATATAGCGCAGCCGGTCTGGCCGCCGTGTGACCCCAAATTGACCGACATGAGCGGCATCGATAAACCTGTGTACTACAACCTGAAGATATAG
Protein Sequence: MRCIVPFCKNESRRTSKSQGITFHLFPTEPSMRAAWLEALDKEGWEPREHSAVCSNHFLTDDLYVTRSGLRKVRPGAVPIVMQVCRICFVTDCRLYPMTVYKNLYQAYEILTGFSIENEQHLPPYLCGECAHRLLGCIHFRTRSLRARMILQDIHKKHDVITLEMVKSINRKQNQLCSTLGVTHYAPDRYDLEVVHEEKEELLAEEQADLNEFMSLHEVNVLDEIKCENDDIQDGLNDTIKDDEVNDDSISVYEDTFVGKDYSSDDSLPLSRSQKPKRKGRKVKKVAKVARDVTQPKIDRRRKPFYSGDVNETLFTVSDLTVEEQVAQIEKRRDSANYKNSAFKCTVCYKGFHDADAFAGHMMRHSNESGEHVCTICKTHFKHAHALCKHTNAHHMQRFSCNKCAYVTTHRNSARLHERWHKGTTYQCPHCRELFLKITTYMGHIRIKHPSDFVCQLCGYSFVSEKGIELHKKLKHRLENTQIPEDGPFCELCNVRFVSQEAHKRHVSVSAKHNTGDKQNGPKQIKLRNAPPAHHASKKFPALPPGPIPCEQCDQQFESSRAYHVHFRRMHPDKNRTNYPSMKSPCMCEVCGRIFQSHSILRDHRWVHTGERPFACDVCGKSFRMRSRLVLHRHVHSQLRSTYMCSVCGKHFSSHANCQRHMFIHTGLKPFECEMCGKSFKSVTEKRAHITYVHLKKPERGGGCERDIAQPVWPPCDPKLTDMSGIDKPVYYNLKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01082506;
90% Identity: iTF_01082506;
80% Identity: iTF_01082506;