Osyl011292.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ochlodes sylvanus
Gene Symbol
Prdm1
Assembly
GCA_905404295.1
Location
FR990128.1:7542739-7548986[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 3e-05 0.0025 18.7 2.5 1 23 799 821 799 821 0.99
2 5 3.2e-06 0.00028 21.7 5.0 1 23 827 849 827 849 0.98
3 5 1.9e-06 0.00016 22.4 4.3 1 23 855 877 855 877 0.98
4 5 0.06 5.2 8.3 3.1 1 23 883 905 883 905 0.97
5 5 0.0001 0.009 16.9 0.1 1 22 911 932 911 932 0.96

Sequence Information

Coding Sequence
ATGAGACTGTCATCCAGCGAGGAGATTCCGAGTACAACGGTGGGTCGCACGTGTAGCCCGGGCAGCCCTGGTACTGGCGGTGCGTATGATGTGACGAGGATGCGCGAGGAGGAGTTCGAACGGCTGACGGTGTACATCGTGCCCGATGTGCCCTGCGAGCGCGGAGTTCCCGGCCGCGCTGAGCGCACGCTGCCCCGGAGCCTCGCGCTCCGCCCATCCGCAGTACTGTCCACACCTAACACACCGACCGAAGGAGTTTGGAGTACAGGAGTCATTCCACGTGGAACCAGATTTGGACCTTTTGAAGGAACAAGAACACCTAACAAACCAAACGATAAAGTCTCCTGGCGATATTATTGGAGGGTGCAGGAAACTGTCAGACATCACACTTATGGAAATATTAAGATATTCAAAGATAGTGATTATTATTACCTGGATGGATCCGACACGAGCGTGGCTAACTGGATGCGATATGTAGCGTCCGCTTATTCGCTTTCAGTGATGAATCTCGTCGCGTGTCAACACCAAGAACACATTTACTTTTACACCATCAGAGATATTATGCCCAATGAAGAACTTATGGTTTGGTACTGTAAAGATTTCGCAACAAGATTAGGTTATGACATCGACCCTGAAAGAGCTACATATTCTATTTGTAAAGAAGAAACTATAAAAAAAGCATATGGCTTGCCACCTGCTCCAGTACATCCAGAAATTGCTTTTAATCATATGAAATATGTACTGGGCCTAACAAATGCAAAAGAACTTCTAGAAACAGAAATTCCTAGTCGAAGAAGGAAAAGAGAATCGAGTGAGAAATTACACCATGAAGCAACAAATCATTTGCCTCGAGAAGAACAACGAAATGTGAACAAAAGTGACAGGTCTATTATTAGATCTGACATATCCACAAATATCATTCATCATAAGGCAGAAACGCCATTAATAAATGAATGCGCAACATTATCCCCCGATGGTTTAATGCAGCCCCCATCACCTGTAAAAATACACCATCGAGACAACCAAACGTTAATAATTCACCAGCATAAAGAAAGCACATCTCATGTAGTTATTCATCAGCTAGAAAATCCCAGAATACACAGCAATAATTCACCTGGACAAAATCACCATCTAAGAGATATGCGTGGACCTTCTCCGATGGCGCAGAATCACCAAGATAAATTGGGAAGTAAATCTCCAAGCCTAACACACTGCGGGCCCCAACATTACGAACATCAATTAACTCCCAATGATGGATCGGTTCGATCCGATGAAGGTTACCACAGCAACGGATATCATGATGAATTTACACCCCCTGAAGATTCTAGTGATTCAGATGTAGAAAATTATGTTTTAGATTGTTCAAATAAAACCAATGAGCCCAAAGAAACTGTTATAGTGCAAAAGACAGATATAGATCGAAATGAATACAGAAAGGTGAAAATTAAAATGCCCCGAGCATATCAATACCAAAATCATAAAGATATGGATTGTGAGAGTGAGAAGGAGTTAATAATAGCAGAAGAAATTGCTAATGACATCCCTCAGAATCTATCACCTCCTCGACGAGATCCTGCTACATCTACGGTAATAGTCTTGGAATCCTCACAAAACACTATTGTTCCTCTGAATAAACCCTACTATGAAGAGGGGGCAATATCTCCATCTCCACAACCAGCTTTTATGCGATATTCTCCACCAGACACCAGGATATTAGAAACAATACTTACTGGAAGCAGAATAGATACTAACAATAATGACCCTAATAGGCGGCAACCAAATGCGACACCACCACCCTCGTCGCCTACTGAAATGGCTTACTCTTATAAGAAAAGCCAGAGATATGGGAATGCTTGCAGTCCAGATTCCAGTTCAAATTTAACGCCGCTGCCGTCATTACTACCATTACCGCAACAATTACCGACTCCAAGTGTAACTTCCGTCTACTCCTCATCACCACCGCATACAATTCCGCATACAACAGAAATCCGAGAAATACGAGAAATAAGGGAAATCAGAGAAACAAGATACGAAAGCCACTACCCGAATTATTCTTATAGTTTATATTCTCCACCAAATTCAACAATTATCACTCAATTAGGATCTCCTTCAAACACTTATTCACCAACTGTAACATCTACGCATCAATATGAAAGGACACAAAATGGACAAAGTGGCCATCACTACCCATCGTCGACGAGCGTTATTACCTTGAAAAACTGCTCACAGCTAAGTTTGATACAAAATTCGAACGTCAATAGTCAACTAGTTCCACAGCATGGCGCTATGAGTCCCGACAGTTTGATGGTAGCACCAATGAGCCCTAATTCCCAGTCATCTCGGGGCTACAGAAGTTTACCCTATCCTCTGAAAAAGAAAGATGGGAAAATGCACTACGAATGCAATGTATGCTGCAAAACGTTCGGTCAATTATCAAATTTAAAAGTACATTTGAGAACACACTCTGGTGAAAGACCTTTCAAATGTAACGTTTGCAACAAATCATTCACGCAACTGGCTCACCTACAAAAACATCACCTAGTGCATACTGGAGAGAAACCGCACCAGTGCGATATATGCAAGAAAAGGTTTTCATCAACATCGAATTTAAAAACTCATCTTCGGCTACATTCAGGTCAAAAGCCATATGCGTGCGATTTGTGTATGCAAAAATTCACACAATTCGTTCACTTAAAACTGCATAAACGGCTGCACACTAATGACAGGCCATACGTCTGCCAAGGATGCGACAAGAAGTATATCAGTGCGTCGGGACTTCGCACCCATTGGAAAACTACTAGTTGCAAGCCTAATAATATCGAAGAAGTCCTAGCAATCACAAACGCTGCCAACACTGAATGTATTGGTACCGTTGACAAAGACTGCCACGAGAGAGAGGGGCACGAGGCGTACGAGGTACACTCGGCGTCGCAGGGAGGGCTGGTGGGAGCCGGTGGGGCGCGAGTGTCGATGTCGCACGGTGAGGTGCTGATGGGAGGCCACGCGCACACCACTACGCCTCACCTGGTGACGGGTCACGGACAGTTGTCGCCCGGACACGGATACCGGGCGCTGCCACCGCCCGATCACGAGCCACAGCACTACACGACGGCCGCGGAGACGCGTCCCAGCGTTATCGAGTCCAACCAGCCCCTCATCATCGAGTGTACCTGA
Protein Sequence
MRLSSSEEIPSTTVGRTCSPGSPGTGGAYDVTRMREEEFERLTVYIVPDVPCERGVPGRAERTLPRSLALRPSAVLSTPNTPTEGVWSTGVIPRGTRFGPFEGTRTPNKPNDKVSWRYYWRVQETVRHHTYGNIKIFKDSDYYYLDGSDTSVANWMRYVASAYSLSVMNLVACQHQEHIYFYTIRDIMPNEELMVWYCKDFATRLGYDIDPERATYSICKEETIKKAYGLPPAPVHPEIAFNHMKYVLGLTNAKELLETEIPSRRRKRESSEKLHHEATNHLPREEQRNVNKSDRSIIRSDISTNIIHHKAETPLINECATLSPDGLMQPPSPVKIHHRDNQTLIIHQHKESTSHVVIHQLENPRIHSNNSPGQNHHLRDMRGPSPMAQNHQDKLGSKSPSLTHCGPQHYEHQLTPNDGSVRSDEGYHSNGYHDEFTPPEDSSDSDVENYVLDCSNKTNEPKETVIVQKTDIDRNEYRKVKIKMPRAYQYQNHKDMDCESEKELIIAEEIANDIPQNLSPPRRDPATSTVIVLESSQNTIVPLNKPYYEEGAISPSPQPAFMRYSPPDTRILETILTGSRIDTNNNDPNRRQPNATPPPSSPTEMAYSYKKSQRYGNACSPDSSSNLTPLPSLLPLPQQLPTPSVTSVYSSSPPHTIPHTTEIREIREIREIRETRYESHYPNYSYSLYSPPNSTIITQLGSPSNTYSPTVTSTHQYERTQNGQSGHHYPSSTSVITLKNCSQLSLIQNSNVNSQLVPQHGAMSPDSLMVAPMSPNSQSSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCNKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCMQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNIEEVLAITNAANTECIGTVDKDCHEREGHEAYEVHSASQGGLVGAGGARVSMSHGEVLMGGHAHTTTPHLVTGHGQLSPGHGYRALPPPDHEPQHYTTAAETRPSVIESNQPLIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01221988;
90% Identity
iTF_00887727;
80% Identity
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