Osyl024166.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- -
- Assembly
- GCA_905404295.1
- Location
- FR990136.1:12308425-12314062[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.056 4.8 8.4 0.3 2 20 60 78 59 79 0.93 2 14 0.035 3 9.0 0.5 2 21 84 103 83 107 0.89 3 14 0.056 4.8 8.4 0.3 2 20 121 139 120 140 0.93 4 14 0.056 4.8 8.4 0.3 2 20 145 163 144 164 0.93 5 14 0.056 4.8 8.4 0.3 2 20 169 187 168 188 0.93 6 14 0.094 8.1 7.6 0.2 2 20 206 224 205 225 0.93 7 14 0.056 4.8 8.4 0.3 2 20 230 248 229 249 0.93 8 14 0.094 8.1 7.6 0.2 2 20 267 285 266 286 0.93 9 14 0.094 8.1 7.6 0.2 2 20 291 309 290 310 0.93 10 14 0.056 4.8 8.4 0.3 2 20 315 333 314 334 0.93 11 14 0.035 3 9.0 0.5 2 21 339 358 338 362 0.89 12 14 0.056 4.8 8.4 0.3 2 20 376 394 375 395 0.93 13 14 0.056 4.8 8.4 0.3 2 20 400 418 399 419 0.93 14 14 0.035 3 9.0 0.5 2 21 424 443 423 447 0.89
Sequence Information
- Coding Sequence
- ATGGTAGAAGCCTTAGCAAAACCTTACCACCATGGAAGTACCGTCAGGATTAAACCGGGTGGCGCAGTTCCCAGCGACTTCCAACAGGTGACACTTGGTCCGACGTCCAGCATGGTGCCCCACTATCAAGAAATGCTGCCGACTCAACTGCAACTGCACCATTTACCATCAGATAGCTCATGTGTCGACTGTAACTTGACCCTTCCCCGTTGGTTCCAGCTGCAACTGCACCATTTACCATCAGATAGCTCATGTGTCGACTGTAACTTGACCCTTCCCCGTTGGTTCCAGCTGCAACTGCACCATTTACAGACAGCTCATGTGTCGACTCTGCAACTGCACCATTTACCATCAGATAGCTCATGTGTCGACTGTAACTTGACCCTTCCCCGTTGGTTCCAGCTGCAACTGCACCATTTACCATCAGATAGCTCATGTGTCGACTGTAACTTGACCCTTCCCCGTTGGTTCCAGCTGCAACTGCACCATTTACCATCAGATAGCTCATGTGTCGACTGTAACTTGACCCTTCCCCGTTGGTTCCAGCTGCAACTGCACCATTTACCATCAGATAGCTCATGTGTCGACTCTGCAACTGCACCATTTACAGACAGCTCATGTGTCGACTGTAACTTGACCCTTCCCGATTGGTTCCAGCTGCAACTGCACCATTTACCATCAGATAGCTCATGTGTCGACTGTAACTTGACCCTTCCCCGTTGGTTCCAGCTGCAACTGCACCATTTACCATCAGATAGCTCATGTGTCGACTCTGCAACTGCACCATTTACAGACAGCTCATGTGTCGACTGTAACTTGACCCTTCCCGATTGGTTCCAGCTGCAACTGCACCATTTACCATCAGATAGCTCATGTGTCGACTGTAACTTGACCCTTCCCGATTGGTTCCAGCTGCAACTGCACCATTTACCATCAGATAGCTCATGTGTCGACTGTAACTTGACCCTTCCCCGTTGGTTCCAGCTGCAACTGCACCATTTACCATCAGATAGCTCATGTGTCGACTGTAACTTGACCCTTCCCCGTTGGTTCCAGCTGCAACTGCACCATTTACAGACAGCTCATGTGTCGACTCTGCAACTGCACCATTTACCATCAGATAGCTCATGTGTCGACTGTAACTTGACCCTTCCCCGTTGGTTCCAGCTGCAACTGCACCATTTACCATCAGATAGCTCATGTGTCGACTGTAACTTGACCCTTCCCCGTTGGTTCCAGCTGCAACTGCACCATTTACCATCAGATAGCTCATGTGTCGACTGTAACTTGACCCTTCCCCGTTGGTTCCAGCTGCAACTGCACCATTTACAGACAGCTCATGTGTCGACTGTAACTTGA
- Protein Sequence
- MVEALAKPYHHGSTVRIKPGGAVPSDFQQVTLGPTSSMVPHYQEMLPTQLQLHHLPSDSSCVDCNLTLPRWFQLQLHHLPSDSSCVDCNLTLPRWFQLQLHHLQTAHVSTLQLHHLPSDSSCVDCNLTLPRWFQLQLHHLPSDSSCVDCNLTLPRWFQLQLHHLPSDSSCVDCNLTLPRWFQLQLHHLPSDSSCVDSATAPFTDSSCVDCNLTLPDWFQLQLHHLPSDSSCVDCNLTLPRWFQLQLHHLPSDSSCVDSATAPFTDSSCVDCNLTLPDWFQLQLHHLPSDSSCVDCNLTLPDWFQLQLHHLPSDSSCVDCNLTLPRWFQLQLHHLPSDSSCVDCNLTLPRWFQLQLHHLQTAHVSTLQLHHLPSDSSCVDCNLTLPRWFQLQLHHLPSDSSCVDCNLTLPRWFQLQLHHLPSDSSCVDCNLTLPRWFQLQLHHLQTAHVSTVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -