Osyl009391.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- -
- Assembly
- GCA_905404295.1
- Location
- FR990150.1:2721227-2730206[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.027 2.3 9.3 3.4 1 23 162 185 162 186 0.96 2 11 0.0014 0.12 13.4 0.4 1 23 192 214 192 214 0.98 3 11 1 90 4.4 0.4 1 19 218 236 218 238 0.89 4 11 0.051 4.4 8.5 0.0 2 23 250 272 249 272 0.95 5 11 0.00015 0.013 16.4 2.2 2 23 275 297 274 297 0.94 6 11 2.5e-05 0.0021 18.9 1.0 1 23 303 325 303 325 0.96 7 11 1.3 1.1e+02 4.1 0.3 3 21 336 354 335 359 0.92 8 11 0.0083 0.72 11.0 4.5 1 19 364 382 364 385 0.97 9 11 0.0041 0.35 11.9 1.7 1 23 393 416 393 416 0.98 10 11 1.9e-05 0.0016 19.3 1.1 1 23 424 446 424 446 0.96 11 11 0.00011 0.0091 16.9 1.0 1 23 452 475 452 475 0.98
Sequence Information
- Coding Sequence
- ATGGATTTTAGGGCCACTAACATATGCCAAGCCTGTTTATGCGATGATCGAAAAATATACCCCTTAAGTAAACTACAGCCTATCTTAAACGAACTTCAATTTTTGCAGGCAATTCATATCATTGGAGGTGTATGTTGGGAGTGCAGAAGAATTATACTAAACATGCAGCAATTCAAACATCAAGTGGTACAAGCCCAGAGTATTATATACCAAAACTTAAAGGATTGTATATTACATAACTCTGAAGACTTCAAAGGTGAAGATGATAAGGAAACAAAATTTGTGAAGAATTTGGATTCTGGAGATGAAACTGAAGTAAATAAAAAAAATAAGGTTTTAAACATGGTCAACAAGAAAATACGGTCAAGCGATAAAGAAGACGAAGTGCTAAGAGAGCAGTTCACTACAGTAATATTCTCTGAGGAGGAGATGGTCAGGAACAGAGAAGAGAAGAGAAGCCAGCCGAACTACAAGAAGATACCGTATAAGTGTGACTCTTGTGTTCTCGGTTTTACGAGGAAAGAGACTTACAATTTGCATTATGAGAAGAAGCATCATGAGTCGCTGGGCCTCTTCGTGTGCCCAGTGTGCTCGATCCGGTTCCCGAGCCCCCGCGCGATGGACAGCCACCGCCGCCACCACTACGTGTACTACCGCTGCAGGCTCTGCGACTACGGGACGCGGCAGCGGGGCTCCGCCCTTGCGCACTGCGCCGCTAAGCACGCCCAAGACCGTTCCGGGTCGATACATTGCGGGCAATGTGGGTTTGTTGCCGGCACTCCAGAAGATTTGGCGGAACATAAACGAATCGCGCATTTGTTGTCCTGCAATGAATGCGGGGAAAAGTTTAAAGGGAAACATACTCTTCGAACTCACAAAATACGCATTCACACCTCAAACAGGGGGTATGTCTGTGATATGTGCACCAGGACATTCAAAACCAAATCCCGGTTGGAGTCTCACGTGGGGTCACACAACGCCACGCTGGCCCAGAAGCTGGCATACTGCGGTGTGTGTAACGTCCAATATAAGAACATATATGTGTATCGGAACCACTTGAAGAATAGTGTTAACCATTCGGAACGTGTATACCACTGTCAAGACTGCAATAAGCGTTTCGCTTCGAAGGTGTACTGGCAGAAACACTGCGACTTCTACCATTTGCAAAAATCACAGCACAAATGTAATATTTGTGATAAGTTATTAATATCAGACTGGCGACTGAAGAATCACATGCAGACGCGGCATGGCTCCAGTCGAACGAGGAAACACGCGTGTGCCGTGTGTGAGAAGAAATTCTTCACAGCGTCGACCCTCCGCGCGCATCAGCTGACGCACTCGACGCAACGGAGCTATATGTGCGAGCAGTGCGGCGATACGTTCAGACAGCGCGCCGCGTTGCACACGCATGCGCGGACGCTGCATGCGCACGCGCACGCGCGTACGCTGACCGGACTGGCTACGTAA
- Protein Sequence
- MDFRATNICQACLCDDRKIYPLSKLQPILNELQFLQAIHIIGGVCWECRRIILNMQQFKHQVVQAQSIIYQNLKDCILHNSEDFKGEDDKETKFVKNLDSGDETEVNKKNKVLNMVNKKIRSSDKEDEVLREQFTTVIFSEEEMVRNREEKRSQPNYKKIPYKCDSCVLGFTRKETYNLHYEKKHHESLGLFVCPVCSIRFPSPRAMDSHRRHHYVYYRCRLCDYGTRQRGSALAHCAAKHAQDRSGSIHCGQCGFVAGTPEDLAEHKRIAHLLSCNECGEKFKGKHTLRTHKIRIHTSNRGYVCDMCTRTFKTKSRLESHVGSHNATLAQKLAYCGVCNVQYKNIYVYRNHLKNSVNHSERVYHCQDCNKRFASKVYWQKHCDFYHLQKSQHKCNICDKLLISDWRLKNHMQTRHGSSRTRKHACAVCEKKFFTASTLRAHQLTHSTQRSYMCEQCGDTFRQRAALHTHARTLHAHAHARTLTGLAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -