Osyl022915.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- -
- Assembly
- GCA_905404295.1
- Location
- FR990129.1:11471674-11474302[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0082 0.71 11.0 0.3 1 23 55 78 55 78 0.96 2 17 0.39 34 5.7 1.9 2 23 104 126 103 126 0.95 3 17 0.0085 0.74 10.9 1.5 2 23 150 171 149 171 0.95 4 17 0.00019 0.017 16.1 0.0 1 23 175 198 175 198 0.97 5 17 0.036 3.1 8.9 0.6 1 23 202 225 202 225 0.97 6 17 0.026 2.2 9.4 0.2 2 23 300 322 299 322 0.96 7 17 5.6 4.8e+02 2.1 0.2 1 23 345 368 345 368 0.89 8 17 0.00064 0.055 14.5 0.4 2 23 392 413 391 413 0.96 9 17 0.019 1.7 9.8 0.5 1 21 417 437 417 438 0.94 10 17 0.27 24 6.2 0.3 1 23 479 502 479 502 0.95 11 17 0.06 5.2 8.2 0.2 2 23 528 550 527 550 0.95 12 17 0.0036 0.31 12.1 0.3 2 23 574 595 573 595 0.94 13 17 2.9e-05 0.0025 18.7 0.0 1 23 599 622 599 622 0.97 14 17 0.009 0.77 10.8 0.5 1 23 626 649 626 649 0.97 15 17 1.9 1.6e+02 3.5 0.6 1 23 654 679 654 679 0.88 16 17 0.062 5.3 8.2 5.7 1 22 688 709 688 711 0.88 17 17 0.0017 0.15 13.1 0.5 1 23 721 744 721 744 0.96
Sequence Information
- Coding Sequence
- ATGTTTGTTACTGCCCGTGCGCTACGTGATCATGAACGCCAAGTGAAGTGTTTCCGAACAGCGTATAAAGCGCGTAATGGAAGAGTGCTAAAGCCTAGAAGTAACGCTGAGATCATTCTACAGTGTTCCACTGCTTGCCCTTTCAGAACATGGATGAATAATTTCAATTGCGTCTTCTGCAGGGTGCAGTTCAGTGAACCGACAGGTCTGAGGAGCCATATGGCTACTAACCATGAAAATTACGACGTTCAGGCGGCATTTTACAAGAAACTGGGGAAGGAGTTTTTAAAAATTGATGTCACTGATCTTCATTGCAAAATTTGTTTTATTCCTATCGAGAACTTTGATATGCTTACTCACCATTTAAAAAGTGATCATCAACAGCCGATAAATTCAGACGCTCAATTGGGTGTGCTACCTTTTAGGCTTAACGACGGATCCATTTGGAAATGCACTATGTGCACCAACGAGTTCAAAGATTTTGTGTCTCTCAAAAAGCATACTTCCGAGCATTTTCAAAACTATGTCTGTGATACTTGCGGCGAGGGATTTATAACTGAATCTGCTATGATCGCGCACACGAAAATTCCTCATGAAAACATATATAACTGCAGTAGATGCGTGGCTACATTTTCATCGTTGGATGATAGGAATTTACATGTCAAAACTCAGCACACTTCTACCCCCTATATGTGCGTTTACTGTAAAGAAAAACCTCGATTTGCTAATTGGGAACTACGATCCACAAGGGAAATTGACGGGCTAAATGAGAAAGAACGTAAACCAAAAAAGAAACTATTCGAAAGGTCGGTTAACCAGAACCCGCAACGTCAAAACGCTGTACTGATTCTTAAACATTCAACTGCCTTCCCTTTTAAGACCCGTTTTAACAGAATTGTCTGCTCGTATTGCCATGATGAATTTGAGCCGATGGCAGCTCTAAGGAACCACATAAAAACAGAACATTCAAATGCAGATTTTAACAGTGCCTTCTACAAAGTTGTTGATGATTTGAAAGTTGATATAACGGAATTCAAATGTAACCTTTGTGCTTCTGAAATATCTAGCGTAGAGGAATTTATGACTCATGTTTCCCGCGACCATGGTAAAATTGTTAACTTTGACGTACCCTTCGGTGTTTTACCGTATCGCCAAGGGCCTACAGGACTTTGGATGTGTCTCGAATGCGACAAAACTTTTTCAGAGTTCTCGCAAATCAACGGACACTTGAGGAGTCATGTGAAAATTTTTACGTGTGACAAATGTGGTGCTACGTTCCTGTCAGAGCACGGATTGAAACAGCACGAACGCAACTTTAAATGCTACAAGGCTACTTATAAACCACGATTCGGAAAGGCATTGAAACATAGAAGTAACACGGAAATTATCCTTCAGTGTTCTACGGCTTGTCCGTTCAGAACGTGGGGTCAGAATTTTAATTGTGTGTTTTGTCGTGTTCAGTCCAATGATCCAAATGGATTGCGAACTCATATGGCATCAAGACATGCAAATTTCGATATTCAACTTGTGTTTAGCAGGAAATTGCGGAAGGAGTTCCTCAAGGTTGATATCACAGACCTTCAATGTAAATTGTGTTTTATGCGTATCGATACACTCGATGATTTGATGGCACACCTGAAGAACGATCATAAACAACCTATTAACGCTGACGTGCAACCCGGTGTGCTGCCCTTCAAATTGAACGATGGCTCAAGTTGGAAATGTGCGATTTGTAAGATACAGTTTTCAGACTTTATATCACTCAAGAAACATACAGCTGAACACTTTCAAAATTACGTTTGTGATACTTGTGGCGAGGGTTTCATCACTGAATCTGCTCTAATCGCGCATACGAAGATACCCCATGACAATAAGTACAACTGTAGCCGTTGCGTAGCCACCTTTTCAACATTGGAGGAGAGGAACATTCACATCAAAACTCAACACACAACACTTCCGTACATGTGCGTCTACTGCAAGGAGAAGCCACGTTTCGCAACTTGGGAATTACGGAAGCGTCATTTAATGGAGTTTCATAATTATAAGCCTGGCGCTGAAATGTACGAATGTACCACGTGTCATATGACTTTCAAGACGAGGTCCCAGAAATACCACCATAATGTTAAGGCCCATAGGACTAAGAAGGAAACTGAATATGGATACCCCTGTGGCCATTGTGCTAGAGCATTTGCATCCAAACTTTCTTTAGATAAGCATATTGCTAAGAAGCATTTCCACATCTAA
- Protein Sequence
- MFVTARALRDHERQVKCFRTAYKARNGRVLKPRSNAEIILQCSTACPFRTWMNNFNCVFCRVQFSEPTGLRSHMATNHENYDVQAAFYKKLGKEFLKIDVTDLHCKICFIPIENFDMLTHHLKSDHQQPINSDAQLGVLPFRLNDGSIWKCTMCTNEFKDFVSLKKHTSEHFQNYVCDTCGEGFITESAMIAHTKIPHENIYNCSRCVATFSSLDDRNLHVKTQHTSTPYMCVYCKEKPRFANWELRSTREIDGLNEKERKPKKKLFERSVNQNPQRQNAVLILKHSTAFPFKTRFNRIVCSYCHDEFEPMAALRNHIKTEHSNADFNSAFYKVVDDLKVDITEFKCNLCASEISSVEEFMTHVSRDHGKIVNFDVPFGVLPYRQGPTGLWMCLECDKTFSEFSQINGHLRSHVKIFTCDKCGATFLSEHGLKQHERNFKCYKATYKPRFGKALKHRSNTEIILQCSTACPFRTWGQNFNCVFCRVQSNDPNGLRTHMASRHANFDIQLVFSRKLRKEFLKVDITDLQCKLCFMRIDTLDDLMAHLKNDHKQPINADVQPGVLPFKLNDGSSWKCAICKIQFSDFISLKKHTAEHFQNYVCDTCGEGFITESALIAHTKIPHDNKYNCSRCVATFSTLEERNIHIKTQHTTLPYMCVYCKEKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKAHRTKKETEYGYPCGHCARAFASKLSLDKHIAKKHFHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00028037;
- 90% Identity
- -
- 80% Identity
- -