Osyl017250.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- -
- Assembly
- GCA_905404295.1
- Location
- FR990139.1:8063035-8073199[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.25 22 6.3 1.2 1 21 6 27 6 28 0.88 2 11 0.034 2.9 9.0 0.0 1 20 31 50 31 51 0.95 3 11 0.13 11 7.2 0.4 1 12 210 221 210 230 0.83 4 11 5.1e-05 0.0044 17.9 4.3 1 23 396 418 396 418 0.99 5 11 3.2e-05 0.0028 18.5 0.5 2 23 434 455 433 455 0.96 6 11 3.3e-05 0.0029 18.5 1.6 3 23 509 529 507 529 0.96 7 11 0.0082 0.7 11.0 1.7 1 23 545 567 545 567 0.97 8 11 0.00086 0.074 14.1 5.2 1 23 573 595 573 595 0.97 9 11 7.6e-06 0.00066 20.5 0.4 1 23 601 623 601 623 0.98 10 11 0.0003 0.026 15.5 0.2 1 23 627 649 627 649 0.97 11 11 0.00025 0.022 15.7 0.1 1 23 657 680 657 680 0.96
Sequence Information
- Coding Sequence
- ATGGAAGACACGATTTTCTACTGTCCTCTATGTTGTAGAAAGGGATTTGATTCTAAAAAATCACTTATTGAACATTTGTCTAGCATATTCTTCCCGTGCCCTGCTTGTGGCACAAAATATACATCAATTGCACAACTAGTAGAACATTTGAGCTGTGATACTTGTGAAACTATAAACACAACTGTAGAATTTAGCAATAAAATAGAACTACAGAGTAATCAAATCAATGATTCAATTGAAAAAACAGAAAATGTTTTGGCCAGTACTGGAAGTAAAAATGAAATGGAAGTTAATATGACTGGGGCTACTATAAAATTCCCATCTGATAATAATGTTGAGGCAAACAAAATGTATATGGAGTTGCTAAGCAAACAATTAGCAAAGCCTTGCCTTCAAACACAAGAATTAAAATTAGTACTAGAAGATGGAGAGAGCCGATATGTAGTTTTGACCCAAAATGATTCAGTTGAAAACCTTTGCACTGATAATACTGTGGTTACAAAACAAAATAATGATGGAACTATATCTTTAACAACAGTAAAAGGAGCAAAACCAGAGTTAGATCAGTGTTTGACTGTGGCTCATGACACACTTAAAGCAGAATCTGAAGAAAATGCATTGGAAATATACAGCTGTAACACTTGTGGGGTTTCCTTCTCTTCAGTTATTGACCATATACAGAATTTCCATAATGATCAAGATGTTGTAGTAGAGGAACCATTAGACGAATCACATATCAAGGGTGATATTGCTGAGAAGGCTGAGACGTCGATGGGCAGAGCTATCACAAATGAGAGGCTGCCACTGCGTCGCATGATTACAGAAACCGGTGACATCGTCGAAACACCCGTAGTCCTCAAAGATTCCGCTGATCAGTCTAGTCATCCATATGAATTAGCCCTTGTAGATCCTGATAGAATAGAAGAACCAAGTAAGTCAGGCTCGGCAGATAAACAAGGCCAGATGAGCAAGGCTAAGGCATCTGGCCAAAAGAATAAGATCTCCAATGGAGCAGTAAAGAATACTAGTGAAGAAGAAAAAAGTGGTCTGTACCACAAGGTTGTCCTGCAAGAGTTGGTAACCACCACCGGCAACAAGGTCAAGATATACAATTGTATCTCATGCAATTTATTTGTGCCTACGTTAGCTGAATTTAAATCACGCCCCTGTATGATATCAAATAAATACACGTGCCCTCACTGTCCAGTGTCTTACGAGAACCACAAGTCACTTTGTGCACACATGAAAATTCACAAATCTAAAGAAACCGTATTCGATTCGCTCATTAAATTAGATTTGGAATGCGCAACTTGCGGGACGGTATTCCCGACGAGGAAATCTCTCAAACTGCATAAGAGGATGCATGACCCTATCAAATCTCGTCCAATAGAGCCGCCGGTGCAGACCGACGAGGGCCAGGTGGCGAGCGAGGACAAGTTCCTGTGCGGTGTGTGCCACAAGCTGATCCCGATCGACTACCGCGTCATCCACCAGAACTCGCACAACAACACCAACAAGATCAACTGCCACATCTGCAACAAGAAGTTCAACTCTCAGGAGTATTTGGATATGCATATGAGCGTGCATAATACTGATAAGGTAGTCGTAGGTAAACAGGACAAATCACTTCCGTATATTTGTATGTTCTGCAACAGACAGTTCGCTCGGCCACATGAGAAGGTTAAACACGAGAGGATACACACCGGTGAAAAACCCCATTCGTGCGAGATTTGCGGCAAGTCGTTCAAAGCTCACAGTGTATATAACCATCACCTGCTAACACACTCGGAGGTGCGCGCGTACAAATGTCCGTTCTGTCCGAAGGCATTCAAGACATCCGTCCAACTCGCCGGACATAAGAATTCGCACACGAAGCCATTCTCCTGCCAGCAGTGTAATCGCCCGTTCGCGTCGCTGTACGCGGTGCGCGTGCACATGGACAGCCACCAGAAGCAGAACAGCCTCAAGTTCTCGTGCTCGCTGTGCGGCGCGAGCTACGCGCGCGCGTTCGCGCTCAAGGACCACGTGCGGCAGGTGCACCAGGCCGACATGGACGCGGCCGACGCGCTGTCGGGTTTGAAAGAGGAGGAGTGGCTGGTAGGGGACGACGAAAAAGAGAGCGTCCAGGCATTACACAGGGATATCAATCAAGAGATCAATGAACTGGACATGAATGCAGATGAGCTGATAATATCTTAA
- Protein Sequence
- MEDTIFYCPLCCRKGFDSKKSLIEHLSSIFFPCPACGTKYTSIAQLVEHLSCDTCETINTTVEFSNKIELQSNQINDSIEKTENVLASTGSKNEMEVNMTGATIKFPSDNNVEANKMYMELLSKQLAKPCLQTQELKLVLEDGESRYVVLTQNDSVENLCTDNTVVTKQNNDGTISLTTVKGAKPELDQCLTVAHDTLKAESEENALEIYSCNTCGVSFSSVIDHIQNFHNDQDVVVEEPLDESHIKGDIAEKAETSMGRAITNERLPLRRMITETGDIVETPVVLKDSADQSSHPYELALVDPDRIEEPSKSGSADKQGQMSKAKASGQKNKISNGAVKNTSEEEKSGLYHKVVLQELVTTTGNKVKIYNCISCNLFVPTLAEFKSRPCMISNKYTCPHCPVSYENHKSLCAHMKIHKSKETVFDSLIKLDLECATCGTVFPTRKSLKLHKRMHDPIKSRPIEPPVQTDEGQVASEDKFLCGVCHKLIPIDYRVIHQNSHNNTNKINCHICNKKFNSQEYLDMHMSVHNTDKVVVGKQDKSLPYICMFCNRQFARPHEKVKHERIHTGEKPHSCEICGKSFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQQCNRPFASLYAVRVHMDSHQKQNSLKFSCSLCGASYARAFALKDHVRQVHQADMDAADALSGLKEEEWLVGDDEKESVQALHRDINQEINELDMNADELIIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00795923;
- 90% Identity
- -
- 80% Identity
- -