Osyl009743.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- Znf526
- Assembly
- GCA_905404295.1
- Location
- FR990150.1:6648555-6660139[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00036 0.031 15.2 5.5 1 23 284 306 284 306 0.99 2 11 2.5 2.2e+02 3.2 0.1 1 23 313 335 313 335 0.91 3 11 0.18 15 6.8 0.5 1 23 339 362 339 362 0.97 4 11 0.035 3 9.0 5.0 1 23 369 391 369 392 0.96 5 11 4.3e-06 0.00037 21.3 0.1 3 23 399 419 398 419 0.97 6 11 0.00029 0.025 15.6 4.1 1 23 425 447 425 447 0.98 7 11 0.00045 0.039 14.9 1.9 1 22 453 474 453 478 0.93 8 11 0.00028 0.024 15.6 0.6 1 23 486 509 486 509 0.96 9 11 0.001 0.089 13.8 0.0 1 23 515 538 515 538 0.98 10 11 4.7e-06 0.0004 21.2 0.7 1 23 547 569 547 569 0.98 11 11 0.00037 0.032 15.2 0.2 3 23 577 598 575 598 0.96
Sequence Information
- Coding Sequence
- ATGGATTCAAGTAATATGAGTGGAAAGATCGATGAGAAATTGGATTTAAGTGACATAGAAGGAGCAAAGTCGATTTGTCGAATTTGTTTAACAAGCAAAAGTAATATGATAGGAATTGGCTTTTATTCACAATTTTTATATGATCTGGCCAATATAACTATATCAGAATCGGACGGGTTGCCGCAATGGCTGTGCAGGGAGTGTACGCTGTTGCTGCACAAATCTGTGCGCTTCAAACAAAAGATCCTGCACACCAACGCCATCCTCAACGACTACCTGCACAGGTGTGTGCCGTTCCCCATAGACCCTCAGGATGCAGAGCTCAAGAAATACGAGTCCCCATACCTGTGTACAACAGAGACTCTCGTGATTGACTCGGGGAAGTCTAAGCCGGGGTTTCACAAGGTTTTGGAGCACAAGCGGCGCGCCCCGCCGCGCGGGCTGCTGCCGTTGGGGCTGCCGCCGGAGCCCGGCCTGCAGCGCGCGCTGGACTCCGTCAAGGATGAGGCCGTCTTCTCCGACTTCGATGATGGTCTGCCGCTTGAGGAGTTCAGATCCAATTTGAACGATGAAGAATTGGAAGCAACGTTTCAAAATGAGATGGTCGCGGAGATAAAGACTGAAGAGAAGAAAGTCAAGAAGAAAAAGAAGTTAAAAGAAGGAAAGAAGAGCAGAGCTGTGAAGGTTGAGGATGAGAATCAGACCGGCGAGGCGCCGTCGGACGGTGCGTTGCGGCCGTCCAAGAGGTGCTCGATACGGAAGGCGCCAGAGATTGACACCACCAAGATTAAGATAGTCATACTGAACCCCGAGGAGCAGGAGGAGAGCCGCGCCGTGCTCAAGTTCCCCTTCCAGTGCCACCTCTGCTTCAAGGGGTTCAACTTCGACTCCAAGCTGCAGAACCACATGAAGAAACACAGCCCGTCCCGCGGGCCGTTCAAGTGCGAGCTGTGCACGATGTACCTGCCGTCCGCGTACAGCGCGTCCGTGCACGCGCTCATCCACACGCGCCGCTTCGAGTGCCGCCGCTGCGGCCGCCGCATGGTCGACCGCGGCTCCATCCTCGAGCACTACCGGTCTCAGCACGAGGGGCTGCTGACGCTGTTCACGTGCAACCTCTGCGGGAAGGTCTCCAACAACAGCAAGACGCACCGCGGCCACATGCGCAACCACCACGGCGGCGCGCGGCCCGCGTGCGCCGACTGCGGGAAGACGTTCGTCAACAACGACTCGCTCGTCGAACACCAGCAGATCCACCAGGGGATCAAGAACTACTCGTGCGAGGTGTGCGGCAGCAAGTTCCGCACGCGCAACCAGATGAAGCACCACCAGCTCAAGCACTCGGACGTCAAGGAGTACTACTGCGTCGAGTGTGACGTCAGATTCAAATCTGCGCACACCCTCCGACAGCATCTACAGAAGAGCTTGAAACATAAGGACACGCAGAGTCTCAAGTTCCCGTGCGAGCGCTGCGAGAAGCGGTTCGAGACGGAGGCCGCGCTGCGACACCACGAGAACGTGCAGCACGACGGCGTGCGCGCGTACCGGTGCCCGCAGTGCCCCGCGGCGCTGGCCACGGCCAACTCGCTGGCGAAGCACGCGCGCGTGGTGCACGCCGGCCGCCGCCCGCCCGCGCGGCACGTGTGCGACACCTGCGGGAAGGTGTTCCGGGGCAAGAGCGTGCTGGTGAACCACGTGCGCACGCACACGGGCGAGAAGCCGTTCGGGTGCGCGCAGTGCGGGCGCGCGTTCACGCAGCGCACGGCGATGCGCACGCACGTGCGGCTCGTGCACCTCAAGCTGCCGCCGCGCGCCCGGATCAAGGCCGAAGCGCCCCCCGCGCCCCCTGCGCCGCCGTCGAAGCCCGAGTTCAACAAGGAGGCCCCGCTGTTCGACTGGCGGCAGCCGCCCTGCGAGTACTTCATCGTCACCGCCGGCCCCTAG
- Protein Sequence
- MDSSNMSGKIDEKLDLSDIEGAKSICRICLTSKSNMIGIGFYSQFLYDLANITISESDGLPQWLCRECTLLLHKSVRFKQKILHTNAILNDYLHRCVPFPIDPQDAELKKYESPYLCTTETLVIDSGKSKPGFHKVLEHKRRAPPRGLLPLGLPPEPGLQRALDSVKDEAVFSDFDDGLPLEEFRSNLNDEELEATFQNEMVAEIKTEEKKVKKKKKLKEGKKSRAVKVEDENQTGEAPSDGALRPSKRCSIRKAPEIDTTKIKIVILNPEEQEESRAVLKFPFQCHLCFKGFNFDSKLQNHMKKHSPSRGPFKCELCTMYLPSAYSASVHALIHTRRFECRRCGRRMVDRGSILEHYRSQHEGLLTLFTCNLCGKVSNNSKTHRGHMRNHHGGARPACADCGKTFVNNDSLVEHQQIHQGIKNYSCEVCGSKFRTRNQMKHHQLKHSDVKEYYCVECDVRFKSAHTLRQHLQKSLKHKDTQSLKFPCERCEKRFETEAALRHHENVQHDGVRAYRCPQCPAALATANSLAKHARVVHAGRRPPARHVCDTCGKVFRGKSVLVNHVRTHTGEKPFGCAQCGRAFTQRTAMRTHVRLVHLKLPPRARIKAEAPPAPPAPPSKPEFNKEAPLFDWRQPPCEYFIVTAGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01439273; iTF_00167117;
- 90% Identity
- -
- 80% Identity
- -