Osyl012494.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- zfh1
- Assembly
- GCA_905404295.1
- Location
- FR990143.1:440726-445870[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8 1.5e+02 3.6 1.2 3 23 258 278 256 278 0.89 2 14 0.42 37 5.6 0.1 2 23 317 339 317 339 0.92 3 14 1.8e-05 0.0016 19.3 0.3 2 23 364 385 363 385 0.97 4 14 9.7e-05 0.0083 17.0 0.6 2 23 393 415 392 415 0.96 5 14 5 4.3e+02 2.2 0.1 1 23 421 443 421 443 0.87 6 14 1e-05 0.0009 20.1 3.0 1 23 449 471 449 471 0.98 7 14 0.008 0.69 11.0 1.0 1 17 477 493 477 494 0.92 8 14 1.6 1.4e+02 3.8 2.9 1 23 641 663 641 663 0.96 9 14 7.3e-05 0.0063 17.4 2.0 2 23 670 692 669 692 0.92 10 14 6.8e-06 0.00059 20.7 0.6 1 23 698 720 698 720 0.98 11 14 6.1e-07 5.2e-05 24.0 0.7 1 23 726 748 726 748 0.98 12 14 0.00044 0.038 15.0 0.4 1 23 755 777 755 777 0.97 13 14 7.3e-05 0.0063 17.4 1.9 1 23 783 805 783 805 0.92 14 14 0.1 8.6 7.6 3.5 1 23 811 834 811 834 0.90
Sequence Information
- Coding Sequence
- ATGAGTGCTGAGACGGAAGAAAATATACCTGATGGTTTTCCAGAGGTGGTCTCAGATAACACGAATGCAAAAATAGCCATCCGTTTTCCGAATGTAGTAACGCCCGATTCTTTGTCAAACATGTCTGAAATGCAGAGCCTGTGTCGAATATGTGGTATCGAGACAACGCAGATCATCCCACTGTTCAAAGGATTGGGTGCGGAGTATGACTTACCAGCCTTAATTCGGAAATACATTTCTCTAAGGGTGCTGAGGTCGGAGTCCCTGCCGCAGCAGGTGTGCGAGAAGTGCGCCAACTCGCTGCTGACGTGGCACGAGCTGGTGCGCACGGCGCGCCTCACCGACTACATGCTGCGCAAACGCTTCCGCTCCGTGTCGCTGTCGATACCGCCCCCGCCCCCCAGCGAGTCCTCCGGCACTGAAACCATCAACAATGGAGTTAAGTGTGAGTCGCCGGCCTTGTTCAGCACTGTAGTTAAAAATGTATTGACTAATTACTTCCACACGCTGAATATCGAAGTAGACAATGCAGACTTCGAGTACGTTTGCCAAAAGTGTAACGCGACGTCCGTCGGAAACAGAATCGAGGATTTAACGGAACATCTAACGGCGAGCCACGAGGCCGCAGTTGGCTGCGAGCGGTCGGTAGAAGATTTCATCAGGGGCAACATTACGTTCGAGGAGAGCTTAGTGAATGACGAGGACGAATATGTCGACGGTGATGCGGGCGGCGCGCTGGACACGAGCGAGACGTCCCCCCCGCAGTTCTGGTGTCCGTATTGTGAAAGCATGTTTTCTTCCCCGACGAGACTGCTGTGCCACCTCGGCAGGCACGTGGCCGTGGACGGCGCGGGCGGCGTGCCGTGCTGCGGCGCCGTGCACGCCGACCGGGACGCCCTCGGGACGCACCTGCGGCAGCGGCACGCCCGGCGCGCGCCCGCCGCCCCGGTGTGTCGCACTTGCGGCTTCTCCGCCGCGGACGAGGCGGAATTGCGCGACCACGTTAGCCAATCCCACGTGGAGGCGACGGCCACCTCACCGGACCGAAATAAACGGACGACTTCGACCTCTCAAAAATACATTCGCGTCGAATGCCCCGCCTGCAATAAGATTTTTTCGAATAAGTACAACATGTCGGTACACTTGCGGAGTCACGGCGCCGGGCCGAGGAAGTTGACGTGCGAGAGCTGCGGCAAGAGCTACCGCAGCCACGGCGGGCTGGCGCAGCACCGGCGCGTGGTGCACGCGGGCGAGCTGCGGCACGTGTGCGCGGCGTGCGGCGAGGGCTTCCCGTCGCGGCTGGCGCGGGACGTGCACGCGCGCCTGCACTCCGGGGACCGCCCCTACTCGTGCCACTACTGCGGGAAGTCGTACCGAGCTCGGAACACCCTGAACAGACACCTCGAAATGCACCTCGATATCAGAAAGCACGCGTGCCACCTCTGCCCGAAGAAGTTTAGGAAGAGTACACATTTGAGATCGACGCACCGAGTCGACCTCCGAAGGCGTGAGTCAACGCAGAAGGAGAGCGCGACAGATTTTAGCGCTCGGAACGGAGACGAGCCGACCGACTGGACTGAGCCGGAGCGCGGCGCCGACCGGAACTCGTTCTCGGAGGACGATGCCCCGCTGTCGAATATCGCTACTAAAAAATCGACCGAGCTCTACGACAAACTTTACGCGGCGCTGGCCAACTTCAGGGATCACCTCGCTAGCGAACATAACTCGCTCGAGTGCAGCTATCCAGATTTCACGGATTCGAACGACTCCGGAGGCGAGGGCGACGCGCGCCCGGAGGCCGAGCCGGACGTGGACCGGTACGACGACCTGACGCGCAGCAACATGAGGAAGGACCGGATGGATGAGGCGACGCGCGCGGAGCTGAGCGCGGCGCGCACCGAGCTCGGCGGGAAGGTGTACTACGCGTGCCGCACGTGCGGCCGCAACCTGAGCTCCACGCACACGTACCTGTTCCACCAGCGGATCCACACGGGGGAGCGGCCGTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGAGCGCCCAGCGGCCTGCAGCGCCACCTCACCGAGACGCACGAGAGGCTGCGCCGGTACTCGTGCAGCGTGTGCCCCAAAATCTTCGTCAACCTGCAGAATCTGAAGCAACACTTCCGTATCCACACGGGCGAGCGGCCGTTCGAGTGCCCGCGCTGCGGCAAGCGGTTCGCGCAGAGCGGCAGCCTGCACGCGCACGCGCGCACGCACAGCGAGCAGCACGCGCGGCACGAGTGCGGCGAGTGCGGCGCGCGGTTCAAGCTGCGCGCGGGGCTGGCGCGCCACCGGCTGCGGCACTCGGGCGAGCGGCCGCACGCGTGCGCCGTGTGCGGCAAGCGGTTCCGGCAGCGGCACGACCTCACCGCGCACGCGCTCTTCCACTCGGACGCGAAGCCGCACGCGTGCGCGGCCTGCGGCGCCGCCTTCCGCCAGCGCAAGGCGCTCCGCCACCACTGCAGGCGCGTGCACGACACCGACCCCCCGGCCGCCGCCGCCGCCGCCGCCGCCCTCACCGCCCCTGCGCCCAGCGAGGTGGCGCAACAGCTCACCTACGGTCCCGTGCAGCCCTACTACAAAATTATGCCTTAA
- Protein Sequence
- MSAETEENIPDGFPEVVSDNTNAKIAIRFPNVVTPDSLSNMSEMQSLCRICGIETTQIIPLFKGLGAEYDLPALIRKYISLRVLRSESLPQQVCEKCANSLLTWHELVRTARLTDYMLRKRFRSVSLSIPPPPPSESSGTETINNGVKCESPALFSTVVKNVLTNYFHTLNIEVDNADFEYVCQKCNATSVGNRIEDLTEHLTASHEAAVGCERSVEDFIRGNITFEESLVNDEDEYVDGDAGGALDTSETSPPQFWCPYCESMFSSPTRLLCHLGRHVAVDGAGGVPCCGAVHADRDALGTHLRQRHARRAPAAPVCRTCGFSAADEAELRDHVSQSHVEATATSPDRNKRTTSTSQKYIRVECPACNKIFSNKYNMSVHLRSHGAGPRKLTCESCGKSYRSHGGLAQHRRVVHAGELRHVCAACGEGFPSRLARDVHARLHSGDRPYSCHYCGKSYRARNTLNRHLEMHLDIRKHACHLCPKKFRKSTHLRSTHRVDLRRRESTQKESATDFSARNGDEPTDWTEPERGADRNSFSEDDAPLSNIATKKSTELYDKLYAALANFRDHLASEHNSLECSYPDFTDSNDSGGEGDARPEAEPDVDRYDDLTRSNMRKDRMDEATRAELSAARTELGGKVYYACRTCGRNLSSTHTYLFHQRIHTGERPCVCHVCGKQFRAPSGLQRHLTETHERLRRYSCSVCPKIFVNLQNLKQHFRIHTGERPFECPRCGKRFAQSGSLHAHARTHSEQHARHECGECGARFKLRAGLARHRLRHSGERPHACAVCGKRFRQRHDLTAHALFHSDAKPHACAACGAAFRQRKALRHHCRRVHDTDPPAAAAAAAALTAPAPSEVAQQLTYGPVQPYYKIMP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -