Basic Information

Insect: Ochlodes sylvanus
Gene Symbol: -
Assembly: GCA_905404295.1
Location: FR990129.1:11196137-11211748[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.0015 0.13 13.3 0.9 1 23 76 99 76 99 0.94

2 25 0.68 58 4.9 0.0 2 23 126 148 125 148 0.93

3 25 4.3 3.7e+02 2.4 0.7 2 23 171 193 170 193 0.92

4 25 0.014 1.2 10.2 0.0 1 23 197 219 197 219 0.96

5 25 0.14 12 7.1 5.2 1 20 224 243 224 245 0.91

6 25 2.5 2.2e+02 3.1 4.2 2 23 254 276 253 276 0.87

7 25 0.0004 0.035 15.1 0.8 1 23 283 306 283 306 0.96

8 25 0.039 3.3 8.8 0.6 2 23 595 617 594 617 0.93

9 25 6 5.1e+02 2.0 5.3 2 23 640 661 639 661 0.96

10 25 0.00044 0.038 15.0 0.1 1 23 665 687 665 687 0.97

11 25 0.007 0.6 11.2 1.1 1 23 692 715 692 715 0.89

12 25 0.048 4.1 8.6 1.7 2 23 723 745 722 745 0.96

13 25 0.0022 0.19 12.8 1.5 2 23 753 774 752 775 0.95

14 25 0.00054 0.046 14.7 0.5 1 23 781 803 781 803 0.96

15 25 5.7e-05 0.0049 17.8 1.8 1 23 809 831 809 831 0.98

16 25 8.5 7.3e+02 1.5 1.4 1 9 837 845 837 845 0.91

17 25 0.039 3.3 8.8 0.6 2 23 982 1004 981 1004 0.93

18 25 2.5 2.2e+02 3.1 2.8 2 23 1027 1048 1026 1048 0.96

19 25 0.00042 0.036 15.0 0.1 1 23 1052 1074 1052 1074 0.97

20 25 0.007 0.6 11.2 1.1 1 23 1079 1102 1079 1102 0.89

21 25 0.024 2.1 9.5 1.0 2 23 1110 1132 1109 1132 0.96

22 25 0.0028 0.24 12.4 0.7 2 23 1140 1161 1139 1162 0.95

23 25 0.085 7.4 7.8 2.6 1 23 1168 1190 1168 1190 0.95

24 25 9.1e-05 0.0078 17.1 1.9 1 23 1196 1218 1196 1218 0.98

25 25 9.5e-05 0.0082 17.1 3.3 1 23 1224 1247 1224 1247 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.0015	0.13	13.3	0.9	1	23	76	99	76	99	0.94
2	25	0.68	58	4.9	0.0	2	23	126	148	125	148	0.93
3	25	4.3	3.7e+02	2.4	0.7	2	23	171	193	170	193	0.92
4	25	0.014	1.2	10.2	0.0	1	23	197	219	197	219	0.96
5	25	0.14	12	7.1	5.2	1	20	224	243	224	245	0.91
6	25	2.5	2.2e+02	3.1	4.2	2	23	254	276	253	276	0.87
7	25	0.0004	0.035	15.1	0.8	1	23	283	306	283	306	0.96
8	25	0.039	3.3	8.8	0.6	2	23	595	617	594	617	0.93
9	25	6	5.1e+02	2.0	5.3	2	23	640	661	639	661	0.96
10	25	0.00044	0.038	15.0	0.1	1	23	665	687	665	687	0.97
11	25	0.007	0.6	11.2	1.1	1	23	692	715	692	715	0.89
12	25	0.048	4.1	8.6	1.7	2	23	723	745	722	745	0.96
13	25	0.0022	0.19	12.8	1.5	2	23	753	774	752	775	0.95
14	25	0.00054	0.046	14.7	0.5	1	23	781	803	781	803	0.96
15	25	5.7e-05	0.0049	17.8	1.8	1	23	809	831	809	831	0.98
16	25	8.5	7.3e+02	1.5	1.4	1	9	837	845	837	845	0.91
17	25	0.039	3.3	8.8	0.6	2	23	982	1004	981	1004	0.93
18	25	2.5	2.2e+02	3.1	2.8	2	23	1027	1048	1026	1048	0.96
19	25	0.00042	0.036	15.0	0.1	1	23	1052	1074	1052	1074	0.97
20	25	0.007	0.6	11.2	1.1	1	23	1079	1102	1079	1102	0.89
21	25	0.024	2.1	9.5	1.0	2	23	1110	1132	1109	1132	0.96
22	25	0.0028	0.24	12.4	0.7	2	23	1140	1161	1139	1162	0.95
23	25	0.085	7.4	7.8	2.6	1	23	1168	1190	1168	1190	0.95
24	25	9.1e-05	0.0078	17.1	1.9	1	23	1196	1218	1196	1218	0.98
25	25	9.5e-05	0.0082	17.1	3.3	1	23	1224	1247	1224	1247	0.98

Sequence Information

Coding Sequence: ATGACGCAAAGATCTATAGAAAAAACATCCAAAAAGGACTGCTCAAGCGCAATAAAGTCTGAATTGTTGAAAATCACTGTTGATAAAGACTATATTGTGAATAAAACACGAAAATACAATAGTAACAGATTAGGTGGTAGTGAGCTACAAAAGCATTTTGCAAACATAAAAGAAATATTGCAGTGGTCCAATGCCACTCCGATACGCTGTCGTGGTGGCATAGGATATTCGTGTTGCTACTGCAGTGAACAGTTTCCTGACCCGGCTGATCTTAAAAGCCACACTCTTCTCTCCCACGTGGGAATATCAAATGCTAGCTTCACCAAGAAACGCGATATGACTGGACTGGCCGTGAAGTTGGATATAACGAACTTGCGCTGCAAAATATGCGCGAAAGATATCGAGGATCTTGATATGTTGATGGACCACCTAATAAATGAACACTGTATAGAACTGCATACGGATATCAAAAGCCACATGTTACCATTTAAATTCGAAAGCGATTTGCTGCGTTGCTTCATTTGTCTTAACGTATACCACAGATTCAAGGGTTTGTTGGAGCACATGAGCGGTGTTCACAGTAGGAATTACATATGTGATGTTTGTGATGCTGGTTTCGTGAATTTGAGAAAGCTTGTCACTCACGCTAATGGCCACAAAACAGGTTCATTCAAATGCACGTACTGTGATAAATTTTTTGTGTCCCTAAAGAAACAAAAGTCACACGAAAAATGCGTGCACACTCATCCGAAGGGCAATAAATGTGGATATTGCAATGAGACTTTTAAATGTCACTCGCAGAAGGAAAAACATTTAGTTGAAGTTCATGGAGCTCAGATTCCCACCTACAACTGTTCCGCGTGTGATAAACAATTTACTACCCGTAGAGCTTATAGAGTTCATATTTTAAGAGATCATCTGTTGGAGAGAAAGCACGCATGTAAAGACCGCCATGTTGTCATCAAAATTGATAACTGGGATTATAGAACGGGACAAATCCGAAAAGAACAAATAATTTTGAAAAAAATAAGTAATGATGATGATGATGAAGAAGATGATAAACAGCACATAAAAATACTTCATGAAAAGGAGGAGAAAACTGCATGCAAGAAAAACGTAACTGAAGAAAAGAAGAAACCCGATAAACCGTATAAACCGAATACGATAGTTGGAGGCCACTCGACCAGATCCCCAGAGCTTACTAAAAACCGTATAAATTTGCAAGCAGTACTATTGTACTCAAATGCAACGCCAATACGATGTCACGGAGACACGGGTTACGCGTGTTGCTTTTGCGAAGACCAGTATCTTGATCCAGCTGACCTAAAGAAGCACGCATTAGAAACGCACGACTCCAAAACTATGTGTAAACGGCGCAAAGGAACAAAGGAAGTCACCCCCAAAACTTTTAAGCTACAAGAATTGAAGACAGAAGTCGATATCGAAATCGATTTAAAGGATTTAAATGAAAGTGTTGATGACAAATCACCAGAAATTAGTAATTTAAAACCATGTAAAAATAAACCGGTAAACAAGTTAATCAACGAGTTGGACAAACACCGCAACAATATTAAAGAGGTGTTACTATGTTCGAATGCTACCATCATTCGTTCCCATAGCGACCTAGGCTATTTATGTTTCTTTTGCAAGGAGCAACAACTTAACCCGGCCGAGTTAAAAAGACATAATCTTAAACAGCATTCCAGAGATTATACCACAGCTCAATTCAAGAAAAAGAGAGATCTTAAAACCTTTTCCGTGAAGCTCGACATTACTGAATTAGAATGCAAAATATGTCATAAAAGAATTGATTCGCTCCAGGATCTGTTTGACCATTTGATTAATGAGCACAAAAGAAATGTTTTCACAGATATAAAAAATCATATTGTTCCCTTTAAGTTTGACACAGAAATTCTCCGGTGTGCCATATGTTCAATCGAGATCAGTACTTTCAAATGCCTGTGCGTGCACATGCACAAACACTTTAGGAACTTCGTATGTGATATATGCGACGCGGGTTTCATCAATCGGAGAGGTCTAAACACACATTTAGATAGTCACAATGTTGGAGTGTATTCTTGTCAATATTGCAAGAAGGTTTTCGACACGAAGAGAAAGAAAGTGGCACACGAACAGGGGGTCCACGTGCACTCTAACTTAAGAAATAAATGCAGGTATTGCAACGAGAAATTTACTAACCTACGAAAAAAGGAACTTCATTTGGAGACCGTGCACGGAGGTAAATCGGTGGCTGTAAAGTGTCAAGCCTGTGATAAAATGCTAGTGAACCGTGATGGTCTTAGAAAACATGTAAAGAGACACCACTTAATGGAAAAACGTCATGAATGCCCTGAATGCGATATGAAGTTCTTTTCCAACGGCGCTCTTATGATTCATAGGGTGAAGCATTCAAAAATTCGTGAATTTGAATGTCAGATATGCTACAAGAAGTATGGGAGAAAGTACACTTTGCGCGAACATTTACGGATACACGCAAACGATCGTCGCTTCAAGTGCGAATTTTGCGGTAAACGGCACAAAGGAACAAAGGAAGTCACCCCCAAAACTTTTAAGCTACAAGAATTGAAGACAGAAGTCGATATCGAAATCGATTTAAAGGATGTCAATGAAAGTATTGATGTCAAATCACAAGAAATTAGTAATTTAAAAGCATGTATAAAGAAACCGGTAAATAAATTAATCAAAGAGTTGGACAAACACCGCAACAATATTAAAGAGGTGTTACTATGTTCGAATGCTACCATCATTCGTTCCCATAGCGACCTAGGCTATTTATGTTTCTTTTGCAAGGAGCAACAACTTAATCCGGCCGAGTTAAAAAGACATAATCTTAAAGAGCATTCCAGAGATTATACCACAGCTCGATTCAAGAAAGAGAGAGATCTTAAAACCTTTTCCGTGAAGCTCGACATTACTGAATTAGAATGCAAAATATGTCATAAAAGAATTGATTCGCTCCAGGATCTGTTTGACCATTTGATAAATGAGCACAAAAGAAATGTTTTCACAGATATAAAAAATCATATTGTTCCCTTTAAGTTTGACACAGAAATTCTCCAGTGTGCCATATGTTCAATCGAGATCAGTACTTTCAAATGCCTGTACGAGCACATGCACAAACATTTTAGGAACTTCGTATGTGATATATGCGACGCGGGTTTCATCAATCGGAGGGGTCTAAACTCACATTTAGATCGTCACAATGTTGGAGTATATTCTTGTCAATATTGCAAGAAGGTTTTCGACACGAAGAGAAAGAAAGTGGCACACGAACAGGGGGTCCACGTGCACTCTAACTTAAGAAATAAATGCGGGTATTGCAACGAGAAATTTACTAACCTACGAAAAAAGGAACTTCATTTGGAGACCGTGCACGGCGCTAAATCGGTGGCTGTAAAGTGTCAAGCCTGTGATAAAATGCTAGCGAACCGCGATGCTCTTAGGATACATGTAAAGAGACACCACTTAATGGAAAAACGTCATGAATGCCCTGAATGCGATATGAAGTTCTTTTGCAACAGCGCTCTTATGATTCATAGGGTGAAGCATTCAAAAATTCGTGAATTTGAATGTCAGATATGCTACAAGAAGTATGGGAGAAAGAAAACTTTGCGTGAACATTTACGGATACACGCAAACGATCGTCGCTACAAGTGCGAATTTTGCGGTATGACTTTTGTGCAAAAATGTAGTTTGACCGGCCATTTACGCTCCAAACATCCAGAAGAAATAGATCCGTAA
Protein Sequence: MTQRSIEKTSKKDCSSAIKSELLKITVDKDYIVNKTRKYNSNRLGGSELQKHFANIKEILQWSNATPIRCRGGIGYSCCYCSEQFPDPADLKSHTLLSHVGISNASFTKKRDMTGLAVKLDITNLRCKICAKDIEDLDMLMDHLINEHCIELHTDIKSHMLPFKFESDLLRCFICLNVYHRFKGLLEHMSGVHSRNYICDVCDAGFVNLRKLVTHANGHKTGSFKCTYCDKFFVSLKKQKSHEKCVHTHPKGNKCGYCNETFKCHSQKEKHLVEVHGAQIPTYNCSACDKQFTTRRAYRVHILRDHLLERKHACKDRHVVIKIDNWDYRTGQIRKEQIILKKISNDDDDEEDDKQHIKILHEKEEKTACKKNVTEEKKKPDKPYKPNTIVGGHSTRSPELTKNRINLQAVLLYSNATPIRCHGDTGYACCFCEDQYLDPADLKKHALETHDSKTMCKRRKGTKEVTPKTFKLQELKTEVDIEIDLKDLNESVDDKSPEISNLKPCKNKPVNKLINELDKHRNNIKEVLLCSNATIIRSHSDLGYLCFFCKEQQLNPAELKRHNLKQHSRDYTTAQFKKKRDLKTFSVKLDITELECKICHKRIDSLQDLFDHLINEHKRNVFTDIKNHIVPFKFDTEILRCAICSIEISTFKCLCVHMHKHFRNFVCDICDAGFINRRGLNTHLDSHNVGVYSCQYCKKVFDTKRKKVAHEQGVHVHSNLRNKCRYCNEKFTNLRKKELHLETVHGGKSVAVKCQACDKMLVNRDGLRKHVKRHHLMEKRHECPECDMKFFSNGALMIHRVKHSKIREFECQICYKKYGRKYTLREHLRIHANDRRFKCEFCGKRHKGTKEVTPKTFKLQELKTEVDIEIDLKDVNESIDVKSQEISNLKACIKKPVNKLIKELDKHRNNIKEVLLCSNATIIRSHSDLGYLCFFCKEQQLNPAELKRHNLKEHSRDYTTARFKKERDLKTFSVKLDITELECKICHKRIDSLQDLFDHLINEHKRNVFTDIKNHIVPFKFDTEILQCAICSIEISTFKCLYEHMHKHFRNFVCDICDAGFINRRGLNSHLDRHNVGVYSCQYCKKVFDTKRKKVAHEQGVHVHSNLRNKCGYCNEKFTNLRKKELHLETVHGAKSVAVKCQACDKMLANRDALRIHVKRHHLMEKRHECPECDMKFFCNSALMIHRVKHSKIREFECQICYKKYGRKKTLREHLRIHANDRRYKCEFCGMTFVQKCSLTGHLRSKHPEEIDP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -