Basic Information

Insect: Ochlodes sylvanus
Gene Symbol: mecom-b
Assembly: GCA_905404295.1
Location: FR990139.1:7812324-7834391[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.23 20 6.4 0.0 2 23 99 121 99 121 0.93

2 10 0.00079 0.068 14.2 1.1 1 23 128 151 128 151 0.93

3 10 4.1 3.6e+02 2.5 0.6 1 10 157 166 157 169 0.90

4 10 0.0061 0.52 11.4 0.1 9 23 175 190 174 190 0.92

5 10 1.1e-06 9.3e-05 23.2 2.4 1 23 196 218 196 218 0.95

6 10 5e-05 0.0043 18.0 6.2 1 23 224 246 224 246 0.99

7 10 0.0017 0.14 13.1 0.2 2 21 254 273 253 274 0.94

8 10 1.1e-08 9.3e-07 29.5 0.7 1 23 669 691 669 691 0.98

9 10 3.9e-07 3.3e-05 24.6 1.7 1 23 697 720 697 720 0.97

10 10 4.2e-06 0.00036 21.3 3.3 1 23 726 748 726 748 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.23	20	6.4	0.0	2	23	99	121	99	121	0.93
2	10	0.00079	0.068	14.2	1.1	1	23	128	151	128	151	0.93
3	10	4.1	3.6e+02	2.5	0.6	1	10	157	166	157	169	0.90
4	10	0.0061	0.52	11.4	0.1	9	23	175	190	174	190	0.92
5	10	1.1e-06	9.3e-05	23.2	2.4	1	23	196	218	196	218	0.95
6	10	5e-05	0.0043	18.0	6.2	1	23	224	246	224	246	0.99
7	10	0.0017	0.14	13.1	0.2	2	21	254	273	253	274	0.94
8	10	1.1e-08	9.3e-07	29.5	0.7	1	23	669	691	669	691	0.98
9	10	3.9e-07	3.3e-05	24.6	1.7	1	23	697	720	697	720	0.97
10	10	4.2e-06	0.00036	21.3	3.3	1	23	726	748	726	748	0.98

Sequence Information

Coding Sequence: ATGGTCTTCGGCAAAAACGGAGGCTGGCTGGATGGGACACTGGATAATACTAACTGGCTTAAATTCGTCCGGTCATCAAATTATCCTCATGACGTCAACGTACAACATTTATTACTGGGAGGACAAATCTGGTACAAAGTGATCCGCGACATCCCGTCCGGACAGGAGTTGCTGCTCGGTCCGCGGACGCTGCTGCTGGTGCAGGATGACCACGCAGCCGCTGGTCGTGGAGTCTCCAGTGGATCCTCGGGAGCACACCAGACAGAAGACGAGGAGCGAGAGGACACAGACCCCAGATGCTCCTTCTGCGACGCGCCATTTCCTAACATTGACGTGCTCGATCGTCACCTGATCCAGGCGCACGCTCAGCCTGCCTCAGCCTTCCATTGCGAGCTGTGCAACAGAGCTTATAGCTCACGAACCCTGCTACTACGTCATCGAGCCCTCGCTCACACTGACATCAGGAAATACCCCTGTGAAAATTGTCCCAAGGTATGCATAGAACTTCTCTGGACTGTACTGGCATTTAGCGATCCTTCCAACCTGCAGCGCCACATCCGCGCGCAACACGCCGGCGCACGCAGCCACGCCTGCCCCGAGTGTGGCAAGACCTTCACCTCCTCCTCCGGGCTCAAGCAACACACACACATACATTCCAGTGTCAAACCCTTCCAGTGCAAGGTTTGCTTGAAGTCATACACGCAGTTTTCAAACCTGTGTCGACACAAGCGAATGCACGTCGCCTGTAAAACGTTGGTGGAGTGTGGAAAATGTGGACAACCCTTCCAAACTTACGCCTCTCTAACTAAACACAAGAGATTCTGCGATACTGCTACGGCTGCGAATGTCCGTTTGAGAGGACATTTGCCACCAGGTCTTCCTCAGATTCCTCCGTTACCCAACGTCGGGATGAATACGCAAAATAATCCAAATCCGTTTCCAATGTATAGGGGTCAAGCGTTGCCTTTGCCATACAACACTTTTGCTCACTACCCAGCTCTGTTCTCAGCTGCAGCAGCGGCTGCATGTCCGCCTGAATTTTTGAATCCATTACTTTTCAACGTCCAAGGTGCCAGGCTAGCAATGGAACATGATCTTGCTATGAATTCAAATTTATTGGCTCAAAAACAACAGGAAGGACGAATGTCTGTCAAGAGCATGGATAGCTCAACATCGCTGGATGAAATGAAGAAGAGCAAAGAAATGGAATTTGATCAAGCTAAGAGGGATGATGAGAATTCAGACAGAGTAACCCCTAAGTCCCAAGGGCATTACATGAAACAATCCCCATCTTCAGAAGAAACTTCTCAACATAGACCTTCACCAGTAATGCCATTGCAAGCACCTATTGCTCCATTTGGTTTCAGTAGCAATGATGTCAAGCACAGCTCACCGTTTAATTTATCTCTTAAGCTTAATAACAATGACAGCATTGGAAGCAAATCAGTATCTCCTTCCTTGGTTAAAGATTTAAGCAAAAACATTGGGAATGATGAAAAAGGATATTCAGATAATGAAGAAGATTCTAAGAAAGATCAAAGTGATCAACCACTAGATTTATCAGTAGGACGTAAACAAAGCGACAAGGAGTCTGAAGGAGACAACGATGATCGTTCCTTTCGTAACTCGTCGGTTAAGTCTTTTTCTCCGCCAGAGAGTCCAATCGAACGAGAAAATAAGACCCCAGAGAATGATACCACTGATGTTGATGTGGAGGGAGTAGAGCCAAAGCGGGACGATTCTCCTCAACCGTTGGTATCTTCACCTCTAGCGTTCCCGATGCCCGTCCACCCCCAGCACAATAATAGTCTCATAAACGCCATGTATCCTCCATATGAAATGGATTCAATTCTCTCCAGACGCTTTGCCACTCATCCGCCCTACGTTCAGAGCTCTTTCAATTTTTTATCCCCACTTCTCGGGTCTGAAGGGCCGGACCAGCAACCGAGTGCGTATGCGAAATTTCGTGAAATGAACGCCGGCACTGGAAAGCTTCGTGATCGATACGCTTGTAAATTTTGCGGGAAAGTATTCCCGCGCAGCGCGAATTTAACGAGGCATCTTCGTACTCACACGGGGGAACAGCCTTACAAATGCAAGTACTGTGAGCGTTCGTTCTCCATTTCGTCCAATCTTCAGCGCCACGTGAGAAATATTCACAACAAAGAGAGGCCGTTCAGGTGCCCTTTGTGCGACAGATGCTTTGGGCAACAAACGAATCTCGATCGGCACTTAAAGAAGCACGAGGCAGAGGGAGGAGATTCGCCGAGCTCCGCCGATACGGAACGAGAGGATGCGTATTTCGACGACATTAGGTCTTTTATGGGAAAGGTGACGTGCTCTCCTGGACCGCGAACTCCGCCCGTGTCTTCTCCCCACACTGTCGCCCCCCACCCCCCACATCCCCCTCATCCCTCTCGAACATCGCTAGCTATCTCCACATAG
Protein Sequence: MVFGKNGGWLDGTLDNTNWLKFVRSSNYPHDVNVQHLLLGGQIWYKVIRDIPSGQELLLGPRTLLLVQDDHAAAGRGVSSGSSGAHQTEDEEREDTDPRCSFCDAPFPNIDVLDRHLIQAHAQPASAFHCELCNRAYSSRTLLLRHRALAHTDIRKYPCENCPKVCIELLWTVLAFSDPSNLQRHIRAQHAGARSHACPECGKTFTSSSGLKQHTHIHSSVKPFQCKVCLKSYTQFSNLCRHKRMHVACKTLVECGKCGQPFQTYASLTKHKRFCDTATAANVRLRGHLPPGLPQIPPLPNVGMNTQNNPNPFPMYRGQALPLPYNTFAHYPALFSAAAAAACPPEFLNPLLFNVQGARLAMEHDLAMNSNLLAQKQQEGRMSVKSMDSSTSLDEMKKSKEMEFDQAKRDDENSDRVTPKSQGHYMKQSPSSEETSQHRPSPVMPLQAPIAPFGFSSNDVKHSSPFNLSLKLNNNDSIGSKSVSPSLVKDLSKNIGNDEKGYSDNEEDSKKDQSDQPLDLSVGRKQSDKESEGDNDDRSFRNSSVKSFSPPESPIERENKTPENDTTDVDVEGVEPKRDDSPQPLVSSPLAFPMPVHPQHNNSLINAMYPPYEMDSILSRRFATHPPYVQSSFNFLSPLLGSEGPDQQPSAYAKFREMNAGTGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGPRTPPVSSPHTVAPHPPHPPHPSRTSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00277551;
90% Identity: iTF_00970599; iTF_00887618; iTF_01438243; iTF_01439237; iTF_00795886; iTF_00971550;
80% Identity: -