Basic Information

Insect: Ochlodes sylvanus
Gene Symbol: -
Assembly: GCA_905404295.1
Location: FR990137.1:2679392-2692357[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00025 0.022 15.7 3.4 1 23 238 260 238 260 0.98

2 11 0.00024 0.02 15.8 6.5 1 23 266 288 266 288 0.96

3 11 0.0016 0.14 13.2 6.9 1 23 294 316 294 316 0.98

4 11 0.0002 0.017 16.1 1.0 1 23 322 344 322 344 0.97

5 11 6.7e-06 0.00058 20.7 0.6 1 23 350 372 350 372 0.97

6 11 2.1e-06 0.00018 22.3 0.1 1 23 378 400 378 400 0.98

7 11 5.2e-05 0.0045 17.9 0.4 1 23 405 427 405 427 0.96

8 11 3.8 3.3e+02 2.6 0.1 3 11 435 443 434 445 0.90

9 11 2.6e-05 0.0022 18.9 0.4 1 23 468 490 468 490 0.97

10 11 0.0012 0.1 13.6 3.3 1 23 555 577 555 577 0.96

11 11 2.7e-05 0.0024 18.8 4.3 1 23 587 609 587 609 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00025	0.022	15.7	3.4	1	23	238	260	238	260	0.98
2	11	0.00024	0.02	15.8	6.5	1	23	266	288	266	288	0.96
3	11	0.0016	0.14	13.2	6.9	1	23	294	316	294	316	0.98
4	11	0.0002	0.017	16.1	1.0	1	23	322	344	322	344	0.97
5	11	6.7e-06	0.00058	20.7	0.6	1	23	350	372	350	372	0.97
6	11	2.1e-06	0.00018	22.3	0.1	1	23	378	400	378	400	0.98
7	11	5.2e-05	0.0045	17.9	0.4	1	23	405	427	405	427	0.96
8	11	3.8	3.3e+02	2.6	0.1	3	11	435	443	434	445	0.90
9	11	2.6e-05	0.0022	18.9	0.4	1	23	468	490	468	490	0.97
10	11	0.0012	0.1	13.6	3.3	1	23	555	577	555	577	0.96
11	11	2.7e-05	0.0024	18.8	4.3	1	23	587	609	587	609	0.97

Sequence Information

Coding Sequence: ATGTGTATGCCGACGCCGAGCAATGTTTCGGGCTTCGGTTATTCTTGGGGTTTCACCAGTAGTGCGGACCTCACAAAGGGTGAAGTGGATACTCCAAGCAGCATGAGCTATACGCTCGGCAATACAGTGTCACCAGAAACCACTTTGACTGTGATGTCCCACAAAACCCCGCAAGTGCAGGAAAAGGTTGGTGCAGTGGTAGCGGTGTCAAACTCGGCAGCACAAGTGACTAGGGTGGTGACGACTGGGAACCCTGTGACGGCCCGAAGAGCAATGTTTGTGTTGAACGAGGCACCCACGCACACGCTAAACAGAGTCACTCAACAAAACCAAACAGCTACTATACAAACGACGTCGTTGGCAGGGAAGTCGTTTATGACGCCCATCGGACCGATACAACTGACTGCGGAGGAGTGCAATGAGATTCTGATGAAGAGAGCGTTACAAGCGCAAGGGATAGCGACGCCTGTGATAGACGCGTCACAGTTGAATCACACGATACTGAACGGCGGTCTCAAGAGTCTCGCGGAAGCGACGACGCAGCAGTCGCAGGCGGACACCATACAGACGACCGTTCATCAGCACCACTTGCTGCATACTAAACAAGAGCCGGGCACAGCCAACAATTCGCCCAAAGCGGTGTATTCACAGGCGGAGCTGCTCGGCAACAGTGTGATGACGAGCGTGCAGCCGGCGGTGAAGGAGCGGCCGTACTCGTGCGACGAGTGCGGCAAGTCGTTCCTCTTGAAACACCATCTCACCACGCACGCGAGGGTGCACACTGGCGAGAGGCCGCACGTGTGCGCGCACTGCGGCAAGGCGTTCGCGCGCAAGCACTGCCTCAACACGCATTTGCTGCTGCACTCGGCCGACCGCCCGTACCGCTGCCACGAGTGCAAGATGGCCTTCACGCTCAAACACCATCTCGTCACGCACTCCAGGGTACACAGTAGAGACCGTCCGTTCGTCTGTGGGGAATGCGGTCGAGGGTTTCCCCTGAAGAGGCACCTAGTGACGCATACGAAATACCACGCTGGCGAGCGGCCGTACGTGTGTGGGGACTGCGGGGAGAGTTTCGCTCAAAAGGACCACCTTGTGATGCACAGCCGGTTCCACGGGTCGCTGTCGCCGTTCCAGTGCCCCGACTGCGGCGTGGCGTTCGCGCGCAAGTTCCAGCTGGTGAACCACGGGCGGGTGCACGGCCGCGTGCCGCACGCGTGCCCCGTCTGCGGGAAGGAGTTCCTGCAGAAGCGGACGCTCGTCGCGCACATGAAAATCCACACGGGAGAGGGCGTTGTCGCGTGTTTAGATTGCGGCGAAGCGTTCAAATACGACTTTAAGCCGCAAATTGTACAGGTTATTGGTGCAGATGGTCAAATTCTAACAGAGAAGGCACCCGGCTATGCATGTCCTGAGTGCGGTTCGTGTTTCAATACCAAGGAGGCGTTGTCGCTGCACGTGCGCCTGCACGCGGGCGACCGCACGTGCGTGACGGATCTGTGCGCGCTCACCGCCGCGCTGCAGCCGGGCCTCGTCGCCGCGGCGCAGCACGCGCACCACAATCAACCCATCCAAATAATAACGTCCAATCCCAGTAATAATGTAGTTCATACGCAAGTTATAGCAACAAATCATCATGTGAATCCGCCCCGGCCGAAGATACACTTTTGTGTCGATTGCGGGAAAGGGTTTGCAGCGAAACATGGTCTGCTCGCGCATCACAGGAGACACCCGGAGGGTAGTTGCACGCTGCGCACGCACGTGTGCGACCAGTGCGGCAAGGCGTTCTTCCAGAAGAACCACCTCATGCTGCACCAGCGACAGCATATGGACCTGCCGCCGCGAGCCAGCCAAGCGTCCCAGCAGGCGCAGCAGGCCGCCCAGCAGCAGGCGGCGCAGCAAGCGGCGCAGCAGGCGGCCCAGCAGGCGGCGCAGCAGGTGCAGCAAGTGCATCACCAGGTGCAGCACGCGGCGCTCGAGCTCGACGGCCAAGACCACGCGCAGCACATACAAGTGGTAACTAACCGGTCAGGGCAAGTGATTGGTAATCAGATAGTGGTGGGGAGACGCGGCGCGCTCGGGTCACAGCTGCATATCATACCGGCGCCGAGAGACACCAAACCCACACACTTGACGGCCAAGAGACATCAGCATAATAACAGTGACATAAAAGAAGTGGGCGGTCTTGTGGTATCAACGGGGCGGGGTGCGAACATGATCAAATATGAGATTTCTCTGCCACCGCAAAACTCTGTGGTGCAAGTCCAACAATTGGATTGA
Protein Sequence: MCMPTPSNVSGFGYSWGFTSSADLTKGEVDTPSSMSYTLGNTVSPETTLTVMSHKTPQVQEKVGAVVAVSNSAAQVTRVVTTGNPVTARRAMFVLNEAPTHTLNRVTQQNQTATIQTTSLAGKSFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTILNGGLKSLAEATTQQSQADTIQTTVHQHHLLHTKQEPGTANNSPKAVYSQAELLGNSVMTSVQPAVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCAHCGKAFARKHCLNTHLLLHSADRPYRCHECKMAFTLKHHLVTHSRVHSRDRPFVCGECGRGFPLKRHLVTHTKYHAGERPYVCGDCGESFAQKDHLVMHSRFHGSLSPFQCPDCGVAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGVVACLDCGEAFKYDFKPQIVQVIGADGQILTEKAPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAAQHAHHNQPIQIITSNPSNNVVHTQVIATNHHVNPPRPKIHFCVDCGKGFAAKHGLLAHHRRHPEGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRASQASQQAQQAAQQQAAQQAAQQAAQQAAQQVQQVHHQVQHAALELDGQDHAQHIQVVTNRSGQVIGNQIVVGRRGALGSQLHIIPAPRDTKPTHLTAKRHQHNNSDIKEVGGLVVSTGRGANMIKYEISLPPQNSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00673700;
90% Identity: iTF_00971559;
80% Identity: -