Osyl022913.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- -
- Assembly
- GCA_905404295.1
- Location
- FR990129.1:11464823-11468720[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.2 5.3e+02 1.9 0.2 3 23 27 48 25 48 0.86 2 18 7.7 6.6e+02 1.6 0.6 1 23 72 95 72 95 0.88 3 18 4.1e-05 0.0035 18.2 0.3 1 23 143 166 143 166 0.96 4 18 0.033 2.8 9.1 0.4 3 22 172 191 171 191 0.93 5 18 0.027 2.3 9.4 1.2 3 23 200 221 198 221 0.92 6 18 0.013 1.1 10.4 0.6 1 23 228 251 228 251 0.92 7 18 0.0033 0.29 12.2 1.8 1 23 256 278 256 278 0.95 8 18 8.4e-06 0.00073 20.4 0.4 1 20 284 303 284 306 0.94 9 18 4.2e-06 0.00036 21.3 3.1 1 23 312 335 312 335 0.97 10 18 0.0048 0.41 11.7 0.1 3 23 378 399 377 399 0.95 11 18 0.0062 0.53 11.4 2.6 2 23 425 447 424 447 0.95 12 18 3 2.6e+02 2.9 2.4 2 23 470 491 469 491 0.94 13 18 1.1e-05 0.00095 20.0 1.5 1 23 495 518 495 518 0.96 14 18 0.017 1.5 10.0 2.4 2 21 524 543 523 544 0.92 15 18 0.041 3.5 8.8 1.4 1 22 551 572 551 574 0.86 16 18 0.064 5.5 8.2 0.7 1 23 582 605 582 605 0.95 17 18 1.6e-05 0.0013 19.5 0.2 1 23 610 632 610 632 0.95 18 18 3.5e-07 3e-05 24.7 6.1 1 23 638 660 638 660 0.97
Sequence Information
- Coding Sequence
- ATGGCCAAGCGGAATGCGGAGTTAATTGTGAAATACACGACAGCGTACCCGTTCAGACTACCAGAGGATACCATGGTCTGTGTATACTGCTGCGACAGCTATGACGATCCAGCTCTATACAGGGAGCACATGGAGTCGGAACATGAAAAGTTTCAAGTGCGCATGGCATTCGCTCACTGCAATGAAGGCTACATCAAAGCTGATTGCTCAGACCATCGCTGTAGGATGTGCCGCCAGAAATTAGACACGTTAGCCGATGCGGCAAACCATCTCTCCGATTCGCATAGCGTTCCCATCCAGCTGAAGTACGAAATTGGCTTGCAGCCATTCAAGTTGAGTAAGGATTCATTGTGTTGCGCCATCTGTAATGCCAAAAGCCTGTGTCTACGGCAGCTAAGCAGACACACTCAAACTCATTTTCTGAAGTACACCTGCGATTCTTGCGGAAAATCCTACGCAACGATCACTGCCTTGAGGAATCATATGACGTATGGACACACTGGCGATAAAATTTGCAGGAAATGTAAACAAAGGTTCCCAACTTCGGAAGCTAAAAGAAATCACATGGCCACAGCAAAGAAATGCTGGTCACACCTATGCCACTTGTGTGGTGAGAGATTTATCAGCTGGAACGTAAAGCAGGCGCATTTGAAAGAGGTACACGGGGTGCGGAGGAAGAATTACGCCTGTCGGGAATGCTCGGAAGTGTTCGAGGATAGAAAGAAGTATAGGGTCCATTTTACGATACTGCATACTGATGACAGTTTTGTATGTTCCTGTTGCGGGCAAAAGTTTGAATCGAAACGGAACTTGGAGGAACACCGAGTGGTACACACAAAGGAGAAGCTGTTCCCGTGCACAGTCTGTTCAAAATCTTTTCCGAGGAAGAAGAATCTCGTCCAACACATGTGGATACACAGCGAATACAAGAGGTTCAGCTGTGATATATGTAACAAGAAGTTCAATCAAAGAGTCAGCTACAAGACTCACATGAGATCGTATCATCCCGATTTGCAGTTTGATTTGAATCAATCAGGCGAGGCTCCGCATTGTCTGGCGAGACGTAACGCCCAGACTCTTGTATCGTACACAACTGCCTACCCCTTTAGGCTGCCGAATTCTGCCCCAATGTGCGTGTACTGCGATGAAGTTTTATCTGACTTCGCAGCGTTCAGGAAGCATATGGACATGGAGCATAAGACATTCTGGTTGCCAGGAGCGTTCTCACACCTTTTACCAGAGTCATATCTTAAAGTCGACATCACCGATTTAAAATGTAGGATTTGCCAGAGATGCTTTGAAACACTTGACGAAATTGCCGAACACATGAACGAATGCCACATACACAAGATCGACTTGGATTATGAACTTGGACTACATCCTTTTAAGTTCACGGACGCTTTGATGTCCTGTGTTCTTTGTGAGCAGAATTTTTCCTGCATTCGCATGCTCAGCCGCCACATGTTCTCGCATTACACGAAGTATGTATGTGAGGAATGCGGAAACAAATTTTCAACTAGCGGTTCGCTGAATCACCACACTCGTTTTGTTCATACGCTAGGTACGTGCGTTTGCAGGAAATGCAAGAAAACTTTTCCGTCAGAAGACGAGAGGAGACAACACCAACAATCATCGGAGAAATGTTTTAAGTACAGGTGTTCGTATTGCCCGCGACGTTTCTTTAGTTATGTTGTGAAGCAAAGACACCAGGTCGAGGAACACGGCGACCAGGGGAAGGAACAGCATGAATGTCCCGAATGCAAATTGGTGCTCAGAGACATTAAGGCGTACTACAGACACTTTAATTCTGTACATTCTGGGGCCCATTTCGAGTGCTCAATCTGTGGCCGAACATTTGGTAATATGAAGGATCTAAGGCGACACGGAGCGGTTCACGCCACGACTAGGGATCATCACTGCCCTATTTGTTCGAAATCATTTACGAGAAAGGATTATCTTAAACAGCACATGAGGAGTCATATAGCCAAAAAAAAGTAG
- Protein Sequence
- MAKRNAELIVKYTTAYPFRLPEDTMVCVYCCDSYDDPALYREHMESEHEKFQVRMAFAHCNEGYIKADCSDHRCRMCRQKLDTLADAANHLSDSHSVPIQLKYEIGLQPFKLSKDSLCCAICNAKSLCLRQLSRHTQTHFLKYTCDSCGKSYATITALRNHMTYGHTGDKICRKCKQRFPTSEAKRNHMATAKKCWSHLCHLCGERFISWNVKQAHLKEVHGVRRKNYACRECSEVFEDRKKYRVHFTILHTDDSFVCSCCGQKFESKRNLEEHRVVHTKEKLFPCTVCSKSFPRKKNLVQHMWIHSEYKRFSCDICNKKFNQRVSYKTHMRSYHPDLQFDLNQSGEAPHCLARRNAQTLVSYTTAYPFRLPNSAPMCVYCDEVLSDFAAFRKHMDMEHKTFWLPGAFSHLLPESYLKVDITDLKCRICQRCFETLDEIAEHMNECHIHKIDLDYELGLHPFKFTDALMSCVLCEQNFSCIRMLSRHMFSHYTKYVCEECGNKFSTSGSLNHHTRFVHTLGTCVCRKCKKTFPSEDERRQHQQSSEKCFKYRCSYCPRRFFSYVVKQRHQVEEHGDQGKEQHECPECKLVLRDIKAYYRHFNSVHSGAHFECSICGRTFGNMKDLRRHGAVHATTRDHHCPICSKSFTRKDYLKQHMRSHIAKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -