Osyl024839.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- -
- Assembly
- GCA_905404295.1
- Location
- FR990141.1:11189671-11195411[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00014 0.012 16.5 1.5 1 23 185 208 185 208 0.93 2 13 0.12 10 7.3 6.9 1 23 212 234 212 234 0.99 3 13 4.1e-07 3.5e-05 24.5 4.3 1 23 240 262 240 262 0.98 4 13 4.6e-06 0.0004 21.2 3.5 1 23 268 290 268 290 0.97 5 13 7.3e-05 0.0063 17.4 0.1 2 23 298 320 297 320 0.95 6 13 0.00047 0.04 14.9 2.2 1 21 326 346 326 348 0.91 7 13 0.0092 0.79 10.8 2.9 1 23 354 377 354 377 0.98 8 13 0.008 0.69 11.0 0.9 1 23 393 415 393 415 0.98 9 13 0.003 0.25 12.4 5.8 1 23 421 443 421 443 0.98 10 13 2.2e-06 0.00019 22.2 1.6 1 23 449 472 449 472 0.97 11 13 0.22 19 6.5 3.2 2 23 488 506 487 511 0.71 12 13 0.00026 0.023 15.7 0.5 1 23 511 534 511 534 0.95 13 13 1.1e-06 9.2e-05 23.2 1.8 1 23 540 563 540 563 0.96
Sequence Information
- Coding Sequence
- ATGGCAGAAATATTTAACTTACATACGCTCTGCCGCTGTTGTCATAGCGATGGAAGCTTTAAGAGTCTTCAGCTATCTTACGCACACGGCAACCGCATTGAAGTGTACTCCACAATGTTAAAGGACACCCTTGACGTAACGATCAGCCCACCCCCGTTTGAAGCAAGCTATGCCATCTGTGACTATTGCATCAACAAGCTCCGAGACGCTGCCCATTTCAAGCAGCAGGTTTTAGACTGTGAGCTCAAGTTTGAAGAATACTGTAAAAATGAACAGGCATTAACGGTGAAAGAGGAAATAGATTATGAGAGTGGTACTCACTCCGACTTGGGCAGACACAATGAGATCACAGATATGTATGACAATGGAGATGTTCCACCTATATCCGTTCAACAACCAATTGAATATGTAAGAACGGACGAAGCGAAGCCAAAGGTTTCTGATAGAATTTTGACAAAGCATGGCCTTAAAGATAGAGTTAGAAGAAAACAGGCGTATTATTCACTGGACCCCGAGCTGGAATCACATGTCAAGACTGAGGACGGAGATAGCTTTATATGTAAAACGTGTGACAAGCAATTTAAAATGCTCAAACTGCTGCGGAGGCATATTGTGAACCAACACAGCGACGTCTATAAGTGTCAGGATTGTTCGCTACAATGTTCTGGGAGACTGCATTTCCTTAGGCATAGGAAAACTCATGGTATTAGTGCTCCATTCAAATGTCACTTATGTGACAAATCCTTCCGCTCAAAATATACGCTGAAACTACACATCAACGTCCACACGAAAACCGAGAAGTTTCAATGTGATATATGCCACAAAATGTTCAATTACAAGCAGACGTTGAAAAAACATATCCTATGGCATTACGGTGCAACGAAAAAATGCATTTGTGACATATGCGGGAACGGCTTCAACGATATGGCCAACTTGAACATCCACATCAGAGTGGTGCACGAAAAACAGAGACCTTTCAAGTGCCCTCTGTGTGCGAAGACATTCACGGCGAACAAAAATTTGAAGCAGCACTCATATTTCCACACGGGAATAAAGCCCTACAAGTGTGAGGTGTGCAGCGATACGTTCGGAACGTCGTGGAGACTGAGACACCACCAGAATAAATATCATCCCAAGTCCAGCGCCGGGCCGGGAAGGGCCGGGAAGAAGAGGATTTACACCTGCAAAATTTGTAAGCTGCAGCTGGAAAGTCGAGGGAAGTTTATGTCCCATTTAAGAGCACACGTGGGACACAAGGAGTATAAATGCCACATGTGTGTGAAGGACTTTACGTGTAAATATTCCCTGAACCGCCATATCGCATCGCACAGCGGTCTCAAGCCGTACAGCTGCGATCTGTGCGACAAGAAATACACCCAGCAGTCCCTGCTGTGGCGCCACAAGAAAAGAATCCACGATCCAAACAGCCCATCATACGAGGGCCGGCTCGTCGAACGAGTCAAGTGTGATTTGTGTAATAGGAGCTTTAGGAATATGAAGAAACATTTGATTTCACACAAGACCAGACCGCACGTTTGTGAATTTTGCCAGAAGTCCTATCCCGAAAGGAATACTTTGAATAGGCACATACTGCTGGTCCACCAAGGACTCAAACAGCATCCTTGTAACCTCTGCGACAAGAAGTATACCAGATGGGACGGATTACAAAGGCATACAAGGAAGGTACATAAGTTAGAATTAAAAAGGGAAGTAGAGGAGTCCTGA
- Protein Sequence
- MAEIFNLHTLCRCCHSDGSFKSLQLSYAHGNRIEVYSTMLKDTLDVTISPPPFEASYAICDYCINKLRDAAHFKQQVLDCELKFEEYCKNEQALTVKEEIDYESGTHSDLGRHNEITDMYDNGDVPPISVQQPIEYVRTDEAKPKVSDRILTKHGLKDRVRRKQAYYSLDPELESHVKTEDGDSFICKTCDKQFKMLKLLRRHIVNQHSDVYKCQDCSLQCSGRLHFLRHRKTHGISAPFKCHLCDKSFRSKYTLKLHINVHTKTEKFQCDICHKMFNYKQTLKKHILWHYGATKKCICDICGNGFNDMANLNIHIRVVHEKQRPFKCPLCAKTFTANKNLKQHSYFHTGIKPYKCEVCSDTFGTSWRLRHHQNKYHPKSSAGPGRAGKKRIYTCKICKLQLESRGKFMSHLRAHVGHKEYKCHMCVKDFTCKYSLNRHIASHSGLKPYSCDLCDKKYTQQSLLWRHKKRIHDPNSPSYEGRLVERVKCDLCNRSFRNMKKHLISHKTRPHVCEFCQKSYPERNTLNRHILLVHQGLKQHPCNLCDKKYTRWDGLQRHTRKVHKLELKREVEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -