Osyl020387.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- Znf296_2
- Assembly
- GCA_905404295.1
- Location
- FR990123.1:13727715-13742313[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0011 0.093 13.8 0.0 2 20 188 206 187 210 0.95 2 13 0.0033 0.28 12.2 0.2 1 23 246 268 246 268 0.97 3 13 7 6e+02 1.8 2.1 2 20 275 293 274 295 0.89 4 13 0.011 0.97 10.5 0.2 3 23 341 362 340 362 0.95 5 13 0.009 0.77 10.9 0.8 2 21 368 387 367 388 0.92 6 13 0.0032 0.27 12.3 0.6 1 23 396 419 396 419 0.96 7 13 4.1e-06 0.00035 21.4 2.3 2 23 440 461 439 461 0.96 8 13 5.4e-05 0.0047 17.8 6.8 3 23 470 490 468 490 0.98 9 13 3.4e-07 2.9e-05 24.8 1.7 3 23 504 524 502 524 0.96 10 13 2.5e-05 0.0021 18.9 3.2 1 23 530 552 530 552 0.99 11 13 8e-07 6.9e-05 23.6 1.5 2 23 559 580 558 580 0.96 12 13 4.7e-07 4e-05 24.3 1.9 1 23 586 608 586 608 0.98 13 13 0.072 6.2 8.0 1.1 3 23 616 636 614 636 0.97
Sequence Information
- Coding Sequence
- ATGTTGAAATCCAAAATTAAAATTGAAATTGAAGAGGTGTGTCGAACTTGCCTAAAGCAGGATAGCGACGACTTGCGTTCGGTTTTCGACGGGCACCTAGGGAGCATCATAAGTTCAATTACCGGCATAAAGATCGAACCCGGCGATGGACTGCCGACGTACGTGTGCAAAGTCTGTAGGACTAAGGCGGCAGTCGCGTACGAGTACAAACGTCTGACGTTGAAATCTGACGCAATTCTTCGCGGGAATTTCGTGAAGACTGAAGCTGACGGCGCCAATACGGCGCGCTCTGAGCCTGGTCCCTTTTTAGTAAAGACTGAAAATGATGACCTACTGGATCCACCCGATGATCCGACGTTCGGGTCAAATGACGGCGAAGCTGACGGCTCAAATGTCGGCGAAGCTCACGGCTCAAATGTCGACGAAGCTGCCGGCCCACGTGTTGGTGAAATATCAGATTCAAGTCTCGGCGAAGCTTCCGGTTCGATTGACGGCGAAGCTCCGTCTTCAAATGACGGCGAGGCTCCACCTGATCAGGGTGATGTCGAGGACAGCAGCACATACTGCCCAGTGTGCGGTGAGAACTATGAGGACGCAGCTGGACTTACACGTCATATGTGGCAGGTCCACCCTGACATCATGGGACCTAAGAAGCGAGGCAGGCCTAAACAACTGCTCACCGGTGCGATTCTGAAGAAGATGATGGAGAGTGGCCGTCAGTTGCCAGTACGGCGATATTCGTGCGGCCTTTGTCGAACTGACACGTCGACGGCTGATGACCTTTTACGCCACTTGTTGCAGCACAAAGACGACAAGATCCTTCGTTGTGTAGAGTGCACAAGGATGTTTTGGAAGAGGGAAAACTTTGATCAACATCACTGTGGCTGTGTATCGTACAAACAACAACAAGAGAGTGAAACGATTTCGGACGTTCAACCGGCTAAGGAATTGCAGAGGACCGCGACTGAAGTGCCAGTACGGAACTTAATGATGCCCAACAATGATCCTGGCTTGCAAGCGTGTTTTACGTGCGGCAGGGTGTTCCTGTCTTTGTCCGAGTTGAATGTCCATCGTGACATGGAGCACCCTGAGCAGTCTCTACGCTGTGGCCACTGTCATAAGGTGTTCGCGTCCCTCCGCGGCGCCGCGCGTCACCGCAAGTCGTGCGCGAACGTGGAGCGTTCGTTCGCGTGCGACACGTGCGGCGCGCGGTACCAACACGAGATAACGCTCAACAAGCACATACTGCGCGACCACGCCGGCCGCCCCGTGTCCGTGAGGTTCGGCGCCGGCGGGCCGGGCCCCGGCGGCGTGCTCAAGTGCGACACGTGCGGGAGGACGTTCTGTAGGAAAGAACTACTAGTGAAACACATTCAGCTTCACCAACCATCAGACAAATATTACGGGTGTGACTTGTGTCACAAGAAATTCCACCGTAGAAACAATTTGAGGTCGCACATGCGCACGCACGAGACGCGCGCGACGCCGAGCGCGCCGAGCGCGTGCCTCTGTCTGTACTGCGGCCGCGGCTTCTCCAACTCGTCGAACCTCATCGTGCACATGCGCCGACACACCGGCGAGAAGCCGTACAAGTGCGACTTCTGCGGGAAAGGTTTCCCTCGCTCATCCGATTTGCAGTGTCACCGGCGCTCACACACCGGTGAGAAACCGTGTGTTTGTGCGGTGTGTGGAAAAGGTTTCTCTCGCAGCAACAAACTGTCGCGTCACATGCGTGTACACACGGGCCTCAAGCCGTACTCGTGTTTGTATTGCGACAAAAAGTTCTCGCAGAGCAACGACCTAACGCTGCACATCCGGCGACACACGGGACACAAACCGTACGGCTGTGAGGTGTGCGGCGATCGATTTATACACGGCGCCGCCCTCCACAACCACCAGCGTTTCCACAACCATTACCCGGCCTCGGACGTCGTGCGGGGCGGCCGCCAGCTGGCCGTGGGCGGCGCCAGCAATGAGGGTCTCCCCTTCACCGCCCTGACCCTCGCCAACTGA
- Protein Sequence
- MLKSKIKIEIEEVCRTCLKQDSDDLRSVFDGHLGSIISSITGIKIEPGDGLPTYVCKVCRTKAAVAYEYKRLTLKSDAILRGNFVKTEADGANTARSEPGPFLVKTENDDLLDPPDDPTFGSNDGEADGSNVGEAHGSNVDEAAGPRVGEISDSSLGEASGSIDGEAPSSNDGEAPPDQGDVEDSSTYCPVCGENYEDAAGLTRHMWQVHPDIMGPKKRGRPKQLLTGAILKKMMESGRQLPVRRYSCGLCRTDTSTADDLLRHLLQHKDDKILRCVECTRMFWKRENFDQHHCGCVSYKQQQESETISDVQPAKELQRTATEVPVRNLMMPNNDPGLQACFTCGRVFLSLSELNVHRDMEHPEQSLRCGHCHKVFASLRGAARHRKSCANVERSFACDTCGARYQHEITLNKHILRDHAGRPVSVRFGAGGPGPGGVLKCDTCGRTFCRKELLVKHIQLHQPSDKYYGCDLCHKKFHRRNNLRSHMRTHETRATPSAPSACLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCAVCGKGFSRSNKLSRHMRVHTGLKPYSCLYCDKKFSQSNDLTLHIRRHTGHKPYGCEVCGDRFIHGAALHNHQRFHNHYPASDVVRGGRQLAVGGASNEGLPFTALTLAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01082645;
- 90% Identity
- iTF_01082645;
- 80% Identity
- iTF_01082645;