Osyl009678.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- -
- Assembly
- GCA_905404295.1
- Location
- FR990150.1:5872757-5875034[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00097 0.083 13.9 0.7 1 23 8 31 8 31 0.95 2 19 0.0012 0.1 13.6 1.2 1 23 36 59 36 59 0.96 3 19 4.4e-06 0.00038 21.3 0.3 2 23 68 90 68 90 0.97 4 19 1.2e-05 0.001 19.9 1.1 3 23 104 125 103 125 0.97 5 19 1.2e-06 0.0001 23.1 0.7 2 23 133 155 133 155 0.97 6 19 0.019 1.7 9.8 7.2 1 23 163 186 163 186 0.94 7 19 0.002 0.17 12.9 0.6 1 23 192 215 192 215 0.98 8 19 4.6e-05 0.004 18.1 1.3 1 23 223 245 223 246 0.95 9 19 0.0028 0.24 12.5 0.2 5 23 259 278 257 278 0.95 10 19 0.00027 0.024 15.6 1.6 1 23 308 331 308 331 0.94 11 19 0.023 2 9.6 0.3 2 21 339 358 338 359 0.94 12 19 6.7e-05 0.0058 17.5 0.3 2 23 368 390 367 390 0.96 13 19 1e-05 0.00088 20.1 2.8 2 23 416 438 415 438 0.94 14 19 0.00094 0.081 13.9 4.2 1 23 444 467 444 467 0.97 15 19 0.75 65 4.8 5.4 2 23 475 497 475 497 0.94 16 19 1e-05 0.00087 20.1 0.5 1 23 504 527 504 527 0.97 17 19 0.21 18 6.5 0.8 1 20 534 553 534 555 0.93 18 19 0.0052 0.45 11.6 4.9 3 23 570 591 566 591 0.96 19 19 5 4.3e+02 2.2 0.4 1 10 641 650 641 654 0.86
Sequence Information
- Coding Sequence
- ATGGCGCAAGAGACAGACGAATTTATCTGCGACTACTGCGGCCGAGCCTTCAAGTGGAGGAAAAACATCCTCAGACACATCCAGAACTTCCACGTGAGCGCGACATTTTTCTGCGACATCTGCGAGAGCAAGTTCTGCAGCCCCGCTGGCCTGCAGCAGCACCGGATGCGAGGCCACAACCGATTCCAACAGGGGAACCCCGAGTGTAACGAATGCGGGAAGATATTCACAAGGAAAGAAAATGTTGCATACCATTTGAAGACTGTACATTCGACAGGTAAAAAAATACTGAAAATGCTGGAAAATATTTGTGATGTATGCAAAAAGAAGTTCACGAATGTGAAAAATCTGAAAGCCCACGTTAGGAAACTTCACAGTGCAAACTTCGAACATCCGTATTGTGACGAATGTAACAAAGTGTTCAGAAGCAAAGAGTCCCTGATCACGCACATCCAGACAACTCACAAAGTCTCAGCGAAAAATATACACCGATGTCACTTATGCGAAAAAGTGTACTCTTGCCAAAAAAACCTCAAACGACACCTGCTCGCCTTCCACGGCGTAACCGACGAGTATCAATGTACCATTTGCTCAAAAAAACTTGAATCCTACATCGGCATGAGACGCCACGTGAAGACGGCGCACGACATTGACTTGCCCAAAGAGTATACGTGCGAAATTTGTACCAAGGTGTTTTCTGAACAGTCGTATCTAGATTCTCACGTGTCCTTGCATCACAAACAGGACAGCTTACATCCGCAGAAGTTTTCCTGCGAATGCGGCAAAGAATTCGATTCGGAGCCCACTCTCAGACAGCATATTAAATCTGACCACGAGTTTGAGGTGTTCTATTCATATTGCAAGAACTCCCTCCTTCGAACTGTGTCTATCGGCGCTGAGAAATCTAAAGCCACCTCCGGCCACGATTGTGAGATATGCCAGGAACATTTCGGATCGCTTTACGATTTAAGGAACCACATGAAGGCGGATCACGGCCTTCAGTTTTCATTAGACTCGTGTAAGGTTTGCTTCACTCAGTTCTACAGCAAGGAAGCGATGGCCAAGCACCAGAAAGTGTGTGTGCCCCCAAACGACGCGATCAAATGCAGCGAATGTGACAAGCTGTTTACGGCCAAAGCGAGCCTCAACTTGCACATGAATGTGTTTCACCCTGAAACTCAGACATCCTCTGATCCTGCATATGAAGAGTCATCAAAAAGTCTAAACACTGAAACAAATGAAACAAAATGCAAACATTGCGACAAATCGTTCAAAAGCAAGTGGAATGTCCAACAACACATTGAATACGTCCATCTTGGCATGCAGAGGTTTAGGTGTCTTGACTGCGAGTCCCATTTTAAAGAGAGAAGGAATTTACGAAAACACATACGACTTAAGCATCCCCGTTCGTCGACTTTCCCGCAATGTCATTTTTGTCAGAAACGTTTTGAATCTGCAAATATGTGCAAAATACATCTGAAACAGGTTCATTCGTTTGACACTAATACGTTTGCTTGCGAAATTTGCTCAGCGACCTACACCACGAATGACTCGTTGACTTTACACATGAAAACAAAACACTCGGACGAGGAAGAGCTCTTCAAATGCGAGAGTTGCTCAATCATTTTCAAAGGATACGAAACCTTTGAAAAACATAATCAGAAGTGCCAGGAGAATACTTTGGCCGCGCCGGAATGTAAACCTAACTGTGTTATTTGCATGAAGGACTTTTGCACTGAAAAATCATTGAAGCGTCATATAAGAACTTTTCACACAGGCTTAAATCCGGATGACGTGGCTGCGATCGGCTTCAGCAAGAGATTATTTGTAGTCGATTGTAAGGAGTGTTTGAAACTGTTCACTGACGACGGCATGTATCAAATATATCTAAAAAACAAGCATATTAGTGAAGCTATAGTTTTTAAGTGCCCAAAATGCGCAAATACTTTCAATGTTACCGAGTTTGCCGTACAACGGTACAAGAAAACAATGAAGACTCGTAAGAGGAAACGGGCGTCTAATGGAAGCGATGAGGACTAG
- Protein Sequence
- MAQETDEFICDYCGRAFKWRKNILRHIQNFHVSATFFCDICESKFCSPAGLQQHRMRGHNRFQQGNPECNECGKIFTRKENVAYHLKTVHSTGKKILKMLENICDVCKKKFTNVKNLKAHVRKLHSANFEHPYCDECNKVFRSKESLITHIQTTHKVSAKNIHRCHLCEKVYSCQKNLKRHLLAFHGVTDEYQCTICSKKLESYIGMRRHVKTAHDIDLPKEYTCEICTKVFSEQSYLDSHVSLHHKQDSLHPQKFSCECGKEFDSEPTLRQHIKSDHEFEVFYSYCKNSLLRTVSIGAEKSKATSGHDCEICQEHFGSLYDLRNHMKADHGLQFSLDSCKVCFTQFYSKEAMAKHQKVCVPPNDAIKCSECDKLFTAKASLNLHMNVFHPETQTSSDPAYEESSKSLNTETNETKCKHCDKSFKSKWNVQQHIEYVHLGMQRFRCLDCESHFKERRNLRKHIRLKHPRSSTFPQCHFCQKRFESANMCKIHLKQVHSFDTNTFACEICSATYTTNDSLTLHMKTKHSDEEELFKCESCSIIFKGYETFEKHNQKCQENTLAAPECKPNCVICMKDFCTEKSLKRHIRTFHTGLNPDDVAAIGFSKRLFVVDCKECLKLFTDDGMYQIYLKNKHISEAIVFKCPKCANTFNVTEFAVQRYKKTMKTRKRKRASNGSDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -