Osyl005623.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- -
- Assembly
- GCA_905404295.1
- Location
- FR990126.1:10775075-10783977[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0067 0.58 11.2 1.5 3 23 716 737 715 737 0.96 2 23 0.026 2.2 9.4 0.6 1 22 1114 1135 1114 1135 0.95 3 23 3.5 3e+02 2.7 0.4 1 22 1177 1198 1177 1200 0.82 4 23 0.025 2.2 9.4 0.7 3 21 1211 1229 1209 1230 0.94 5 23 0.46 39 5.5 0.1 2 23 1238 1260 1237 1260 0.89 6 23 0.0058 0.5 11.5 0.1 3 23 1281 1302 1279 1302 0.96 7 23 0.0027 0.23 12.5 3.1 1 23 1308 1331 1308 1331 0.95 8 23 0.12 10 7.3 0.0 1 23 1358 1381 1358 1381 0.90 9 23 0.018 1.5 9.9 3.4 1 23 1386 1408 1386 1408 0.97 10 23 0.0062 0.54 11.4 0.2 1 23 1414 1437 1414 1437 0.95 11 23 0.0022 0.19 12.8 1.3 1 23 1450 1472 1450 1472 0.97 12 23 0.00017 0.015 16.3 1.8 1 23 1523 1546 1523 1546 0.97 13 23 0.0041 0.35 11.9 1.6 1 23 1610 1633 1610 1633 0.96 14 23 0.00089 0.077 14.0 2.0 2 23 1658 1680 1657 1680 0.95 15 23 0.0046 0.4 11.8 0.1 2 23 1686 1708 1685 1708 0.95 16 23 0.012 1 10.4 0.2 1 21 1751 1771 1751 1772 0.95 17 23 0.0012 0.1 13.6 0.6 1 23 1782 1804 1782 1804 0.93 18 23 0.00026 0.022 15.7 0.4 2 23 1895 1917 1895 1917 0.93 19 23 1.7e-07 1.5e-05 25.7 1.1 3 23 1924 1944 1923 1944 0.98 20 23 0.0033 0.29 12.2 0.1 1 23 1963 1986 1963 1986 0.95 21 23 0.059 5.1 8.3 0.0 1 23 2013 2035 2013 2035 0.98 22 23 0.026 2.3 9.4 0.6 1 23 2041 2064 2041 2064 0.95 23 23 6.2e-05 0.0053 17.7 0.3 1 23 2072 2095 2072 2095 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGTCCTCGCATCAAAAATAAGGGACTGCGTTTCTGTACAGATAACAGAGAATGACGACCTACCAACTAATGTCTGCAGGAAATGCGTGGACAATGTCAATAACTGGCATATATTTAAGGAAGTTTGTGAAAGGACACAAAACAAGCTACAGTCTCTGAGTAATAAAGATGGCAGCCTACTAGAAGAGATTAAAGTTAAAAATGAGCCATTGTCAGATGGGGCCTATGATGATGGAGTGGTAATTGATGGCTCCTATCCTGATAGTGAGAATGGTGTTACAACAAGTAAATTACAACCAGAAGGGCCACCAATCTTGGCATCATTGGGGCTCACACCGAGGAGTGATAAGACGTATGTAGATCCCCGCATGGATTGGCATCGGGTGCATACAATTATGCAATTGGTTCAAGATGATGAAGCTATTGACTCACTACAGTCCACAGAAGAGAGTGATACGGTGCACCAATCAGATCACGATTCGGATTCAGATGCAGAATTAAATGATGAAATTGATGATAAATACATTAACTGTAAAAATGGTTTTTTGCTTAGGAACACACAATTCTTATCGAAATATCCCAAATTATCATCATCGGTGAATTATGCAAAAGTGAAGGAAGTTGGAGAACTAAGGAAACGTAATGCTAATACATTTAGGCACTATCCCCATCCAAAAAATGCATGGCAGTTATTTTTCACAGATGATTTATTGGAGCTAATTGTGACCTCTACCAATAAAAGAATTAGTGTGGCTCAGAGAGAATCATCTCGCACTAATGTAAATGAAATTAAAACATTTATAGGCATACTATATTTACATGGAATTATGAGGCCAACTCATCAAAAATTTAGTGACCTATGGAATAACAATCTGGGGACGTTGTGTGTCCAGAGAGCCATGAAACTTGAACGATTTAGATTCCTACTTCAGAATTTGAGTTTTGACAATAATGATTGCGACAGTATCATACAACTTGATACAATGAAGCGAATTCGTAAAGTGTTTGAAATATTTGCTTTGAACTGTAGACAAGCATTTGAAGTTCAGAGTGTTACTGTTATTGACGAAATAATTGTCCCAGTGAACGGGCCGTGTCCTTTTCGATTCAAGATAGACAAAAAATCGTTCAAGACTGGAATTAAAATGGTTTTGGCTGTCGATTCATCTAACTTCTATGTAACCAATTTAGATGTTATTACAGACGGTTGTTTTGGACCAGATGAGATTGTCAAAAAGTTGGTTCAACACTTAGCAGGAACTGGCAGATCCATTCTTGTGGATAGCTGGTACACTTCTCTAAAACTTATTGAAATTTTGAAAGATGAATATCAGCTGTTTTGCATAGCAGCTCTTAATCCAAACGATAACATAATTCCACCACTGTTCCTCTCCAAATATAGAATAAATCAGCCATTCATGAGTGGATTTCTGAACAATGACGTGTCATTGACATCGTACGTTAATGCAGAATTAAAGTGTGTGAATGTTTTGACAAGCGAACCTAGGTTTTACAAAAGAGGTCATTCCAATCATACTACAGCAGTGTCATTATATAAAAAACACCACTCTGCGGTGGAAGTTTTAGATGTTCTAATGCATTATTATACCACAGCACAGAATACAAATGATTGGACCATGTCATTATTTTTCACTCTCTTGAACATAGCTACGGTGAACGCCCAAGTTATATGGAGTTCGTTTAACACAGAGAAAATGGTACAGCGCTATGCTTTCATTAAACAATTGGCATTAAGTCTGTTGGACAGGGATGACGTTCCGTTGCTTTTATCAGAATTCATCCAGAAGAAAAAACCTTCACCATCGGTTTTCACTTATAGGAACAGAAAGAGATGCAAGTTATGTGGCGCAGACAGCGAGAAAGATGAGGAGGATGAGGAAGACGATGAAGAGATGAATGAGTCCCAAACGTATCCACCAATCGTGAACGTCCCCAACATGCCAGAAGTTTCCATCACGGTCATGCGCCCCACAGGTGAAACATTACATGCACGTCAAGGTATCCAACAACTCGCATCCAAAGACTGCCTCGTTTGCGGTCGATCGTACCGATACTCTCATAATGCAAGACGTCACGAACTCACTTCGCACGGTTTCGATAGATACACAAATAAAACCACCCATAAAAAAACTGCATCGCACCTACAACCAAAACTTAGGCCTAATCCTTTTAATCCCAAAGCGCGGCTGATGCCTAACCCTATTAGTCATAAAATGCAACTTCTCCCGAAGAACATTCCAACCAAAGCTCTCCCACAAAAAACGATCACTCCAGCAAAACCGATACCCATCAAGACCATAAAACCACCTCAAAATAATCTGCCATATCCATTGCGTATTAAAGCGTTAAAAGATTTACAAATTAAAAAGAAGGAACCTCAAATATTGAAAACACTCCTTACATCTAAGCCGGAAGTACTGATCTCGGAGCCAGAAATAATTAATTCCGGTCCAGAAAGCCCTGAAACTTTAATATCAGAACCAGAAATAGCATCGTTCCAAGTAGAGGCTATTTTGTCCGAGCCGGATGGTTTTGTAAACCAAAACGACGAGGACATAGATCCACATCAATTTAAGTCAAACAATCATGGTCAAAACTATGACACTGTCGATATGGATACTGACAATGAAATTGAAATCGCTCGCCAGCAAGAAAATGAGTGTGAAGATGACCCAGAAAATGACGCAGAAAATAATGGAGATAACGTTAATGATCGAGAAAACGCAACATCTCATAGCGATAATGAGAAACAGCAACAGGAAGGAAATGATATTAAAGCTGAAGGCGAAATAGAAAATAACGACATAAATAAAGAGGATGAACAAACAAAAGAAGATGAGGAAAGAGAAAACGATGACCAAACCCCTCAAGATGAAAACTATGAAGATGATGATGATGAACTACCGCCGGTGAGTCTGGCGCCTGTTGTAGAGATTAATGAAGACATGCAAAATAATTCTTATAACAGTGAGTTAAATGAAGAGGAGGAAGATTTTGAATCAGCAGATGCTAACGATACAGTAGATGGCGATGACAATATCAAAGAGCTAGACCCAAATAAGGTGTATGTTACAAAATTGCAGAGAGATTTCATTGTCAAGTATCGTGACATCATTGAACAGATTAATACCAAAAAATGCCTTTGTTGTAAAAGGGAACATCCGCGTAGAAAAGCAGTCATTCAACATTTACAAAAGAACGGCCATAAAGTACCAAAACATACTTGTTATAATTGCGTAATAACGTTCAGTCATATTGGAGCTTTGCTCAGTCACATGAGATCTAATACGTGCACTGATTTATGGAAAATAATATACAATGAAAATGGTATCACAGATGATCTTGTATTGGAAGATGAACCAAAAGATCCTAAAGTTCAATACAAAGACATTTTTAATGCCAGGTCTTACTCCTGTAAACTGTGTCCTGCCAAATTCCAGTTGAAGCAATTTATAATGAAACATGTTTTGGATGTTCATGAAGATAATCAATCCAAAGTGCATTTAGCTTGTGTCCACTGCGGATCGAGATTCAAAGATACAAAGTTGTGGAAAAAACACATCCGAAATGGCGAATGCACTGTGTACATTTCGTGTGACTTATGCTCAGAAAAGTTTGTCAATATGCAAGACTTTAACGATCATGCCTTAGCCGTACATGCTGGCAACTTTGATTTGTCTGATAGCCATAGCAAATGTGTTGATGGTCGACCTACCGATTGTCCCATTTGCGGCAAGAAGAACAGCAGTTACCCTAATTTGGTCAAACACTTGAAGATTATTCATAATGAGGAAACTCCTCATTACTGCCAGCATTGCGATTCCAAATTCGAACAGGCTGCTGATCTTAACAAGCATATTTACATGCAACACTCTGATAGGTCTCTGGGGGTACAGATTTCAACAGAGCCTGACATGTCCCTTGTCAAGGAAGAAGCAGAAGAATATCATTATTCCTGTACAGAATGCAATGCCATTTTTGAGACTGTGGACGCTTGGACTGATCATCAAGTGGCAGAACACAATCAAGTTGCTCATCACTGTGACCAATGTGAAAAGAAATTTTTGCGACCATCTGAGCTTGCCGAACATAAAAATACACATTTGCGTGTGAAATTTTATCCTTGTAACATTTGTTCTAATTCTTACAGTACTCCTCAAAAGCTCTCTGAACATGTCCAACAGGTTCACCCTGGAACAGGAGGATATAACTCCCTGGATGCTGAATTCTTCTGCGACATCTGCATCAGATCATTTAAAAGCCGTCAGGCATACTCTAATCATATGCGTATTCATTCTAAAGTACCGACTACTAACAGGAAGCCTGGAGATTCAAACCCGAAAGGATTCCCTCCGCAAATAATTGGGAAGCCGATACGGCACTTTTCTATGGTACAGCCCAGCTTCCTATCATTCAAGCCAAATTGTAATGTTCCTAACGCACCTTATTCTTGTGATATTTGTGGCAAAGGTTTTATGCATAAGAAAAATATATGGAAACATAAGAAAGTTCTGCATGCTGATTTGATAAACGATAGAAACGACAGCGAAGAGAACACTATGGCAGCATCCACAGAAGAAGATGATTACAATATGGATGAGAATGGCTCTATGTTGTCAACGCCGCAGTTCAACAGTTTCAATTTTACAAATATGACTAATAATGCACCGCAACAACCTCAGCCTCCGGCACAAGATCCTATGCCATATTCTTGTGAGTTGTGCTACAAACGATTCCCTCTAAGAACAAGTTTATGGAAGCACAAACGCGCCAAGCATGGAATTATTAACGCCAGTGCTATCGGTCCTTCTGACTCTCAGGGAACACCGAATGAATCGTCAGGTCGGTCGAGTTGTACCATATGTAAAATAAGTTTCTCTGACAAGAAGTCCTACTATCGTCATAGGAAAAATGTCCATAAATCTACCGTGCAGATGTGCAAGATTTGCGGTAAACCGCTTAGTTCCACTGTCGAGCTCTATGAGCATTTGCGGGCTGCTCATGCACAAGAATTGCTGGGTTATAATGCTAGTCAGGGACCTAGCAAACAAGAAATAGGACAAGAAATGGAAGCTGATTATGAACAAGATCAGGATTCAATGGATCCTAGTGCTGAGTATCAGGCACGATACCCGTGTGACACGTGCGGAAAACAGTTCGTAGGACTTCTCGCATTGCAGAATCACCAATGTCTCAATCAGATGCAATCCCAGCCGCAAACTTTTGACTGCGAGATTTGTCACAAGAGTTACACATCAATCGCAGCGCTTAAAAGCCACCGTGGTTGGCATTTACGTTCCCCCGACGGTAAAGCCGCTGCCAATAATTCCGGTCTTTGGATGCCGCAACACAAAGTAACAAGCAAAGTTAGTAAACATGAAGTAGTCGATGCTGTTCAACTGGCCAAAGTTCAACATACAACCCCGGTGAGCATAGTTGCAAAACGAAGATTACCGCCGGAAGTGGAAGTGACAGTGGTTAATCCAAACAAGAAATTGCGATCGGACGATTCTGTAGAAATGGATCAGCAAAATAACTCCTCCTCGGGAATAGACGATAGGTATTGTAACTTATGTGACAAGGAATTCACGAAGCGGGCGGCATACCAACGACACATGGACGAGGTTCACCAACCTAACTCTGTCTTCTGTCCGGTTTGCGACAAAAGTTTCACACGGAAGTCGACGTTGATTGTTCATATGAAGAAACACTACGACGGTGGTGAAGGTAGTTCTACGGGAACTTGTCAAATGGATGACGATGCTCATGTGTGCGATGTCTGTGAAATGCCGTTCGAAACTGCAAACGAGTTGAATGCTCATCGCACGGTACAACACGGCGATGGGGACGGGGAAGGTGAGGAAACTGGTGATTCGGATGATGATGGAGTGGGGAATGTCCAGCAGCCAGGTGAATTCACTTGTAGCCAGTGTGGCGACGGCGTGGCCACACCCCGTGACTTGATCGCCCATCGCGCGATGCACGCCACACCGACAAAGTTCTTCTGCAACATTTGCAAAGTATACTTTGCCCGAGCTCTGGATCTTTCGTCGCACACCAGGGCGAGACATTCGGACAATGACAAAGTATGCTTCCCTTGTGCCATGTGCGACCGTTCTTATATGAATAAGAAGAGTTTGCAGCGTCATATTGAAATGGCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKIRDCVSVQITENDDLPTNVCRKCVDNVNNWHIFKEVCERTQNKLQSLSNKDGSLLEEIKVKNEPLSDGAYDDGVVIDGSYPDSENGVTTSKLQPEGPPILASLGLTPRSDKTYVDPRMDWHRVHTIMQLVQDDEAIDSLQSTEESDTVHQSDHDSDSDAELNDEIDDKYINCKNGFLLRNTQFLSKYPKLSSSVNYAKVKEVGELRKRNANTFRHYPHPKNAWQLFFTDDLLELIVTSTNKRISVAQRESSRTNVNEIKTFIGILYLHGIMRPTHQKFSDLWNNNLGTLCVQRAMKLERFRFLLQNLSFDNNDCDSIIQLDTMKRIRKVFEIFALNCRQAFEVQSVTVIDEIIVPVNGPCPFRFKIDKKSFKTGIKMVLAVDSSNFYVTNLDVITDGCFGPDEIVKKLVQHLAGTGRSILVDSWYTSLKLIEILKDEYQLFCIAALNPNDNIIPPLFLSKYRINQPFMSGFLNNDVSLTSYVNAELKCVNVLTSEPRFYKRGHSNHTTAVSLYKKHHSAVEVLDVLMHYYTTAQNTNDWTMSLFFTLLNIATVNAQVIWSSFNTEKMVQRYAFIKQLALSLLDRDDVPLLLSEFIQKKKPSPSVFTYRNRKRCKLCGADSEKDEEDEEDDEEMNESQTYPPIVNVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTSHGFDRYTNKTTHKKTASHLQPKLRPNPFNPKARLMPNPISHKMQLLPKNIPTKALPQKTITPAKPIPIKTIKPPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLISEPEIINSGPESPETLISEPEIASFQVEAILSEPDGFVNQNDEDIDPHQFKSNNHGQNYDTVDMDTDNEIEIARQQENECEDDPENDAENNGDNVNDRENATSHSDNEKQQQEGNDIKAEGEIENNDINKEDEQTKEDEERENDDQTPQDENYEDDDDELPPVSLAPVVEINEDMQNNSYNSELNEEEEDFESADANDTVDGDDNIKELDPNKVYVTKLQRDFIVKYRDIIEQINTKKCLCCKREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFSHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEDEPKDPKVQYKDIFNARSYSCKLCPAKFQLKQFIMKHVLDVHEDNQSKVHLACVHCGSRFKDTKLWKKHIRNGECTVYISCDLCSEKFVNMQDFNDHALAVHAGNFDLSDSHSKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNEETPHYCQHCDSKFEQAADLNKHIYMQHSDRSLGVQISTEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLSEHVQQVHPGTGGYNSLDAEFFCDICIRSFKSRQAYSNHMRIHSKVPTTNRKPGDSNPKGFPPQIIGKPIRHFSMVQPSFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLINDRNDSEENTMAASTEEDDYNMDENGSMLSTPQFNSFNFTNMTNNAPQQPQPPAQDPMPYSCELCYKRFPLRTSLWKHKRAKHGIINASAIGPSDSQGTPNESSGRSSCTICKISFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTVELYEHLRAAHAQELLGYNASQGPSKQEIGQEMEADYEQDQDSMDPSAEYQARYPCDTCGKQFVGLLALQNHQCLNQMQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDAVQLAKVQHTTPVSIVAKRRLPPEVEVTVVNPNKKLRSDDSVEMDQQNNSSSGIDDRYCNLCDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDGGEGSSTGTCQMDDDAHVCDVCEMPFETANELNAHRTVQHGDGDGEGEETGDSDDDGVGNVQQPGEFTCSQCGDGVATPRDLIAHRAMHATPTKFFCNICKVYFARALDLSSHTRARHSDNDKVCFPCAMCDRSYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -