Basic Information

Insect: Ochlodes sylvanus
Gene Symbol: -
Assembly: GCA_905404295.1
Location: FR990151.1:5821981-5833980[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.23 20 6.4 0.3 2 23 216 237 215 237 0.95

2 15 0.019 1.7 9.8 0.3 2 23 518 539 517 539 0.96

3 15 1 87 4.4 3.6 1 23 545 567 545 567 0.97

4 15 9.7e-07 8.4e-05 23.3 4.6 1 23 573 595 573 595 0.98

5 15 1.9e-05 0.0017 19.2 5.4 1 23 601 623 601 623 0.98

6 15 1.1e-05 0.00095 20.0 0.3 1 23 740 763 740 763 0.97

7 15 4.6e-07 4e-05 24.3 1.5 1 23 769 791 769 791 0.98

8 15 0.0001 0.009 16.9 0.2 1 23 797 819 797 819 0.99

9 15 3.2e-05 0.0028 18.5 1.0 1 23 825 847 825 847 0.96

10 15 4.9e-05 0.0042 18.0 2.1 1 23 853 875 853 875 0.98

11 15 4e-06 0.00035 21.4 3.6 1 23 881 903 881 903 0.97

12 15 7.6e-06 0.00066 20.5 2.1 1 23 909 931 909 931 0.98

13 15 3.1e-08 2.7e-06 28.0 1.6 1 23 937 959 937 959 0.98

14 15 1.4e-05 0.0012 19.7 2.7 1 23 965 987 965 987 0.98

15 15 1.2e-06 0.0001 23.1 4.5 1 23 993 1015 993 1015 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.23	20	6.4	0.3	2	23	216	237	215	237	0.95
2	15	0.019	1.7	9.8	0.3	2	23	518	539	517	539	0.96
3	15	1	87	4.4	3.6	1	23	545	567	545	567	0.97
4	15	9.7e-07	8.4e-05	23.3	4.6	1	23	573	595	573	595	0.98
5	15	1.9e-05	0.0017	19.2	5.4	1	23	601	623	601	623	0.98
6	15	1.1e-05	0.00095	20.0	0.3	1	23	740	763	740	763	0.97
7	15	4.6e-07	4e-05	24.3	1.5	1	23	769	791	769	791	0.98
8	15	0.0001	0.009	16.9	0.2	1	23	797	819	797	819	0.99
9	15	3.2e-05	0.0028	18.5	1.0	1	23	825	847	825	847	0.96
10	15	4.9e-05	0.0042	18.0	2.1	1	23	853	875	853	875	0.98
11	15	4e-06	0.00035	21.4	3.6	1	23	881	903	881	903	0.97
12	15	7.6e-06	0.00066	20.5	2.1	1	23	909	931	909	931	0.98
13	15	3.1e-08	2.7e-06	28.0	1.6	1	23	937	959	937	959	0.98
14	15	1.4e-05	0.0012	19.7	2.7	1	23	965	987	965	987	0.98
15	15	1.2e-06	0.0001	23.1	4.5	1	23	993	1015	993	1015	0.98

Sequence Information

Coding Sequence: ATGGATAAAATTACTGATCATAATTGCATGACCAATGAACTAGCTGTAAATTATTCAAAACCTGTCGTGTCCAGAGATATTGCTGTCTGTAATATTGACGTCAAGGTTGAAAATGATACTTCTGTTGACAAAGTAAATATTAACACTGAAGATACAATTAATAACGACATGGTAAACAACCAAATCTTATCCCAATTTGTACCAGTTAACGAAATTAAAGTTGAATACGATGATATCGACCAGGGTGTATCTAAGCCAGATATGTACAAGGTGTGGGGAATGACCAGATGTGAAGATTATGACATCAAGGTTGAAATAAAACAGGAAATTATCAACGATACCACCAACATTGACTTGACTTGCAGTTCAGCGCCTACAGATTCATTTAACAATGTTAAGGGTGCAGGCTGTGGTGGTATGAATCAGGAAAAGCCCAGTATAAATGCAGTCAATGCTTGCGTGAAATGTGAAGATATGTTTGTAGGTGAAGACTACCACTACTCTTCAGCAGAGACAACACAGAGGGCCAAGTGGAGCGGCTCAGAGGTACAACAAGTGAAGATACCAAATGACCCGCCGCAAGAGAAGGTTGAAACACGACGGGAGCCCGCGGCCAGTTGCGGACTGACAGCTGATGATAAACTGTCCTGCGACATATGTCCTTATCACGCTAATAATAAGGTTCAGATGTTGAGCCATGTCAAAGCTCACGCGGCAAATCAGAGTATATTAGCAAAACTAAAGGAGTGCGCACATTATACCAACTCGACGTCAACTCCACTCCGTTTCAACTCCGACGTTCCGTTCCGCGATCAACGCTTCATCGACGTCAACTCGACTCCGTCTCCACTCCGTTTCAACTCCGACGCTAGTTACATTACGTCATTGTGTCGGTCGACGCGTGGACTACTCGTCTACGACATGACTGACAAGGCCAATGCAAAAGCAGATGTCAATTCAACACCTGCTATGTCCGAAGATCGTGTCAATGATATCAAAATTAAGATTGAACGTGTTATTTCTGACGACCTCGTTAAAACTGAAGATACAATTGATAACATGGAGAATAGACAGCCAATGAGTCAATTTGTAGCTGTCAATGAAATTAAAGTTGAATATAATGAAGACGACCAGGAAAATATTACCGAACATATAACCAATGGGATGAGGTGTGAATCAACTCCAACAGTAGATGTTGTCATTGATAACATTAAAGTTGAAGTCCCGGAAATGATAACTGCCGATACAAGCAACATTGAATCCATGTCAACGAAGTTGCCCATAGATATAGTTGTTAAGGTCGAAAAGTGTGGTGTGGTGAATTGGGACGGTGCGAATCAAAGTGCAATCAATGCTAGTGTGAAGCACGAAGTGTTTGAAGGTGGAGAATACTCTGCAGACGACTGTCTCTCTTCAGTAGAGACGACACAGAGAGCCAAGTGGAGCGTCACAGCAGTACAACAAGTGAAGATACCAAATAACCCGCTGCAAGTGAATGTCGACACACGACCGGAGCCCGCGGCTGGCTGCGGACTGACAGTTGACAGTTTGTCCTGTAAAGTCTGTCCTTATCAATCCAACAATAAGATTCAGTTGTTGAGCCATTTGAAAGCTCACGCCGCCAAAGACCGCTTTAGCTGTAATTTGTGTAGTTATATAACTGTACATAAAAATCGTTTGCACGACCACGCTAAAGTACATTCGGATAAGAAACCATTCTCCTGTGCAATATGCCACAAGACGTTTAATCAAAAGCATAACCTTAGAGCCCACTTGAGGATACATTCTGGGGAAAAGCCATTTTCATGTGAAGTCTGCCACAAAGCATTTTCTCGAAAAAATAGTTTTACATATCATATGAAGAAACATTCTCGGGAAGAAGCATTTTCTTCTGGTGTCTGTGATGAAGCAAATAATGAAAAAACGAATCTTGCAGACCGTATAGGGATACATTCAGGGGAAGAAACATTTTCTTCTAACGTCTGTGAGGAAGCAATTAATGAAAAAAATAATCTTGGAGACGATATTGGGATATATTCACGGGAGGAAGCATTATCGTCTGGAGTCTGTGATGAAGGACATAATGAAAAAAAACATGCAGAGGATATTGGGAAACATTCAGGGGAAAAACCATTCTCGTTTGAAGTCTGTGCGGAAGCATTCAATAGAGAATCGTCCCTTAGGACAAATGTGGAAATACAATCAGGTGTGAAACCATTTTCGTGTGAACTCTGCCAGGTTACATTTAGTCAAAAAGGTAGTCTTGCTAAGCATATGATCAAGATACATTCAAGGGATAAACCATTTCCGTGTGATGTCTGCCACAAATCATTTGCTCAAAAAGGTGCTCTTACATATCATATGAGGAAACATGCAAGAGAAAAACCATTTAAGTGCGAAATTTGTCTTGAGATATTTCTGCAAAAAAGCAGCCTTATAGCCCATATAAGGACACATTTTGGGGAAAAACCATATTTGTGTGATATCTGTGATAAAGGATTTAATGAAAAAAGGCATCTCGGAGATCACATTAGAACACATTCAGCGGAAAAACGATTTTCTTGTGATGTTTGTGACAAGTCATTTAAAGAAAGACGTCATCTTGTAGAACACAATAGGATACATACAGATGAAAGGCCATTTTCGTGTGCGGTCTGTCACAAATCATTCAGCCGAAAAGGTCATCTCACAGCCCACGAGAGGTTACATTCAGGTAATAAACCATTCTCGTGTGAAATTTGCCACAAAACGTTTAATGAAAAACGGAATCTTGCGGACCACGTAAGATCACATACTGGTGAAAAACCATTCTCCTGTGAAGTGTGCCAGAAAACTTTTAGTCAACAAGGCAACCTTAAATCCCACATGAGGTCACATTCTGGTTTAAAACCATATTCGTGTAATATCTGCGATAAGGCGTTTAATCGCAATTGTTATCTTAAGATACATGTGAAATTACATTCAGATGAAAAACCATTTTCGTGTGAAGTTTGCCACCAAAGATTCAAACAAAAATCGAATCTTATAACGCACATGAAGAGGCATTCCGGTCGTAAGTCCCGTAAATGA
Protein Sequence: MDKITDHNCMTNELAVNYSKPVVSRDIAVCNIDVKVENDTSVDKVNINTEDTINNDMVNNQILSQFVPVNEIKVEYDDIDQGVSKPDMYKVWGMTRCEDYDIKVEIKQEIINDTTNIDLTCSSAPTDSFNNVKGAGCGGMNQEKPSINAVNACVKCEDMFVGEDYHYSSAETTQRAKWSGSEVQQVKIPNDPPQEKVETRREPAASCGLTADDKLSCDICPYHANNKVQMLSHVKAHAANQSILAKLKECAHYTNSTSTPLRFNSDVPFRDQRFIDVNSTPSPLRFNSDASYITSLCRSTRGLLVYDMTDKANAKADVNSTPAMSEDRVNDIKIKIERVISDDLVKTEDTIDNMENRQPMSQFVAVNEIKVEYNEDDQENITEHITNGMRCESTPTVDVVIDNIKVEVPEMITADTSNIESMSTKLPIDIVVKVEKCGVVNWDGANQSAINASVKHEVFEGGEYSADDCLSSVETTQRAKWSVTAVQQVKIPNNPLQVNVDTRPEPAAGCGLTVDSLSCKVCPYQSNNKIQLLSHLKAHAAKDRFSCNLCSYITVHKNRLHDHAKVHSDKKPFSCAICHKTFNQKHNLRAHLRIHSGEKPFSCEVCHKAFSRKNSFTYHMKKHSREEAFSSGVCDEANNEKTNLADRIGIHSGEETFSSNVCEEAINEKNNLGDDIGIYSREEALSSGVCDEGHNEKKHAEDIGKHSGEKPFSFEVCAEAFNRESSLRTNVEIQSGVKPFSCELCQVTFSQKGSLAKHMIKIHSRDKPFPCDVCHKSFAQKGALTYHMRKHAREKPFKCEICLEIFLQKSSLIAHIRTHFGEKPYLCDICDKGFNEKRHLGDHIRTHSAEKRFSCDVCDKSFKERRHLVEHNRIHTDERPFSCAVCHKSFSRKGHLTAHERLHSGNKPFSCEICHKTFNEKRNLADHVRSHTGEKPFSCEVCQKTFSQQGNLKSHMRSHSGLKPYSCNICDKAFNRNCYLKIHVKLHSDEKPFSCEVCHQRFKQKSNLITHMKRHSGRKSRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -