Osyl024614.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- -
- Assembly
- GCA_905404295.1
- Location
- FR990141.1:7417250-7425469[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.7e-06 0.009 16.2 0.0 7 35 89 116 85 121 0.88 2 2 0.03 28 5.1 0.0 7 34 288 314 285 324 0.85
Sequence Information
- Coding Sequence
- ATGTTGCCAGCACGTAAACCAAAAATCTACCATATTAAACTTGAACTAAAGGGCCGTTTCTTTTCCTTGCTTGTTCCAGGTGTGAGGACGTCGACGGAAATAGTGACGCGACATTTTATAGACCATACGATCGACCACGGGATACCGTTAAACATTCACGCGAGACCACGCATCGTCGGCCGGAGACCAAAGGCTATAGTTAACATAGAAACGGACGTGTTTCAAGAAAAATCATATAAACAGTACTCGTCTCAACATTTACGAGATGCTCTGATAGCTGTGAAGAAAGGTTATAGCGTGTATGCAGCATCGAATAAATACGGCGTGCCTAGGAAAACTCTTCGTAATTGGATGGAAAAATACGACATTAAGAGCCAATTTTCTAAAGAATTTGCGATAGCCAACGTGCAGTGTCAATACGACAGTCCGTCTGATACAGAGGAAGAGAGACCCAGCATTCCTCAAGACCACACGTACGACACTCGGGATGAGCCACCTGCTTTTATTATTCACCAGCTTACTTCAATTCTTCCCGTGCCACGTTCTAACCCATACCGCGCGCCGTATAAACACCCGTCGCGCGCATCGTTTCACGATCCATCCGTTGCTCGTTTTTGTGACACGGATCTAAGGCGCGGCACGGGCTACCCCGCGCCTGTCGCGCCTACGTCTCCCCCTCAGTCAGCAGCGCCGCGGGGCCCCTTCGTTGAAGTCCGACCCACAATCATGGCGCTAAGTCCGGACTGCGTGCCCGCTGTCAACGTCATACACGTTGGGGAGAGGCCGTCAAACCAGGTACCCCAAGCGCCAAGCGAGTGCAGTATGAACAAGCGCATCCGACGCAGTGAGGTCGTTCTGCGGCAGGCCGCCGACTGCGTGTCGCGAGGCCTCACCTTCCAGACCGTTTCCGAGCAGTTCAATATACCCATCTCCACTATACGATTCTTCATGGCTCGTAAAGGTATTTTGCCACGACGTCGACGCGGTCGCAGTATTCAGCCGACTCAGCCTACCCAGAACTGCAACAGCCCGGAACAGTTGCCAGTGTTCAATATGCAGCACTTTAAGCTGCCCGAGACGATCGGGCTGCGATCCGAGGACGACACGACTACGGCTTGA
- Protein Sequence
- MLPARKPKIYHIKLELKGRFFSLLVPGVRTSTEIVTRHFIDHTIDHGIPLNIHARPRIVGRRPKAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKEFAIANVQCQYDSPSDTEEERPSIPQDHTYDTRDEPPAFIIHQLTSILPVPRSNPYRAPYKHPSRASFHDPSVARFCDTDLRRGTGYPAPVAPTSPPQSAAPRGPFVEVRPTIMALSPDCVPAVNVIHVGERPSNQVPQAPSECSMNKRIRRSEVVLRQAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRSIQPTQPTQNCNSPEQLPVFNMQHFKLPETIGLRSEDDTTTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -