Osyl003542.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- -
- Assembly
- GCA_905404295.1
- Location
- FR990122.1:9598930-9600756[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-07 9.3e-05 22.6 0.1 1 41 9 49 9 53 0.92 2 2 3.7 3.5e+03 -1.7 0.0 28 41 240 254 239 256 0.79
Sequence Information
- Coding Sequence
- ATGCCACCCAAACGAGCATTGTGGTCAGAAGATGACCTGGTCTCGGCTGTTCGAGCAGTACAAAGAGGAACTTTGAGTACGTATGCAGCAGCAGAAAGGTACAAGATTCTTAGAAGAACGATCAGAAATCATCTTCAGAGTGGTGTTTTGGTGAAAACACTCGGTCGTAAATCCATACTGAACCCTGAACAGGAAACTGATCTTGTGACAAGGATAGTCAGGTATGCTGAAATAGGACTGCCTATTACACCGATAATACTCCGTCGATTAGTATATAAATATTGCGAGCAAAATAAGATAAAACATAACTTTAATAAGATCAACAAGCAGGCTGGTAAGGACTGGTTTAAAGCCTTTATGAAAAGACATCCCGAAGTGTCTAGGCGCAGAGCTCAGTTTATGAATCCAGCTAGAGCCCAAAAGCTTAATAAATTTATTGTTGATGACCACTTCGAAAGATTGAATAAAGTCTACGATGAACTGAACCTGAAAGACCACCCCGAAAGAATATACAATATGGATGAGAAAGGGTGCCGGCTCACTATTCATCACCAGCAAACTGTTTTAGCCAAAAAAGGAGCTAAAAGGGTACACTTGCAGTCTTCCGAACACGCTGAAAGTGTTACAATTGCAGGGTGCGTAAATGCACTGGGTACTGCCATTCCGCCAATGGTTATATTTAAAGGCAGTCGTTTAAAGCCAGAACTCTACGATAATTTGCCAACGGGAACGTTGGTAGAAAAATCAAAAAAGGGATACATGACCAATGAACTTTTCAAATTTTTTTTAAAGCATCTGGCTAGATACAAAAGTACAGGACAGTGCCTTTTGATTTTTGATGGAGCAGCATGTCATTTAGACCTCTCAATTGTCGACATTTCTGCAGAACTTGGCATTTCTTTATACTGCTTACCATCGAACACCACACATGAACTGCAGCCCCTAGACAAAGCTGTCGTCTATAGATCTTTTGAGCACCATTGGGATGCTGAAGTATTGTCATTTAAGGACCAATCTAGAGACAAAAAACTCACTAAGGCCCGTTTTAATGTCATTTTCTCGAGCGTTTGGTCAAAATGTATGACTCACAGCAACATAACGAGTGGTTTTAGGGCAACTGGATTATACCCTTTCAACCCACAGGCTATACCAGAAACAGCCTTCGCTCCATCCATTTTAACAGAAGCTCCAGTGCCTGACGTTGTAGATCATGGACCACATATTAATCTCCATCAGCCACACACACCAGACACGCCTCAGACGCCAGAACTCCCAATCAATGACATCGTACAAGAGAATATGCCACCGGCGGATTATTCTCAGCCAAGAACACCTAGTAAAAGATTTTCAGCTCAAATATTGTCAACATTAACGCCAACAGAGCAGACTCCAAAGCAAGTTCATGGTGCGAATTCTAGTACAGACGATGAAGATGAAATACCTTTAATTAAACTGAAAAAAACTAACTTCTATAATCTATTACCTACGCCGAGTAAAGTGAACGAAAAAACCGCATCTGTCCGTCGAAAAGCTATTAATTACAGAGGTACTGTCGTGACAAAGGATTTGTTTGAAAAATATAATGAAGAAAAACAAAAAAAAGATGAAAAAACAAGGAATGGGAGAAAGAAAGACAAAGGAAGAAAGAAAAGTAACGCATCTACCAAAGTTTCTGCTACCACCGACGGTTGGTTCTGTCATGCCTGTGCAGAAGACAGAATCAATGACATGAGGCAATGCTCTAAATGCACAAAATGGTATCATGAGGAGTGCGTTGGACTATCAGCCGAAGATACTGACACTTTTGTGTGCCCGGGTGGATGTTAG
- Protein Sequence
- MPPKRALWSEDDLVSAVRAVQRGTLSTYAAAERYKILRRTIRNHLQSGVLVKTLGRKSILNPEQETDLVTRIVRYAEIGLPITPIILRRLVYKYCEQNKIKHNFNKINKQAGKDWFKAFMKRHPEVSRRRAQFMNPARAQKLNKFIVDDHFERLNKVYDELNLKDHPERIYNMDEKGCRLTIHHQQTVLAKKGAKRVHLQSSEHAESVTIAGCVNALGTAIPPMVIFKGSRLKPELYDNLPTGTLVEKSKKGYMTNELFKFFLKHLARYKSTGQCLLIFDGAACHLDLSIVDISAELGISLYCLPSNTTHELQPLDKAVVYRSFEHHWDAEVLSFKDQSRDKKLTKARFNVIFSSVWSKCMTHSNITSGFRATGLYPFNPQAIPETAFAPSILTEAPVPDVVDHGPHINLHQPHTPDTPQTPELPINDIVQENMPPADYSQPRTPSKRFSAQILSTLTPTEQTPKQVHGANSSTDDEDEIPLIKLKKTNFYNLLPTPSKVNEKTASVRRKAINYRGTVVTKDLFEKYNEEKQKKDEKTRNGRKKDKGRKKSNASTKVSATTDGWFCHACAEDRINDMRQCSKCTKWYHEECVGLSAEDTDTFVCPGGC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -