Osyl023449.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- -
- Assembly
- GCA_905404295.1
- Location
- FR990136.1:591860-601592[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-10 1.1e-07 32.0 0.0 4 39 178 214 176 218 0.90 2 4 8.6e-12 8e-09 35.6 0.4 4 39 231 266 228 269 0.92 3 4 3.9e-15 3.6e-12 46.3 0.0 2 45 284 328 283 328 0.96 4 4 2.8e-18 2.6e-15 56.3 0.0 1 42 335 377 335 379 0.95
Sequence Information
- Coding Sequence
- ATGCCGGGGCCGGGGCCAGCGCTGGTCAAGTGCGAGCCGCACTCCGACGACGAGGACCCACACTACCACCCGCCGTACATCGCCAGTCAGAAACTGGCAACGCAACTTGTATCAATAAAATTGGAAAGGGAAGGCTCCGGCGAAGAGAATGTGTCTACGGACCTCTTACGTCATTTACAGCAATGTCTGGAGGAGCCGCTGGCGCCGGCCGCGCCCGCCGCCACGCCGGTGCGCGCGCGCTTGCCCGCGCCGCCCGCCGCGCCGCTCGAAACGCTCGAGACGCTCGAGCCCGCCACGCACGCCGCACATCCTACACTACTGGGTACCACCCTAATGGACCGGCGCGCGACAATGCTGTCGACTGCGGAGTTGCCGGACTCCTCGGACTTCGTGCCGTTACTCGCTGTCAAGGACGAACCGCTCTCTGAAGGAGAACAGCACCAGCTGAGTAGCGACGACACGAGTGACTCTGGCGGCGGCGGCGGCGCTGGTGTCGGCGCGCGCGGCTCGCCCAAATCCTGGTCGCAACGGGACATGGACAGCGCGCTCGACGCGCTCCGGAACCACCGCATGAGCCTCACCAAGGCTTCAGCGCGGTTCGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGGCACGCCCAAGGAGGGCGGCGCGCGCTCGTGGGGCGAGCGGGAGCTGCGCGCCGCGCTGCACGCGCTGCGGGCTGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCCTACGGCATCCCCAGCAGCACGCTGTACAAGATCGCGCGGCGGGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCGACCGCGTGGCGCCGCGCCGACCTGCGGCGGGCGCTCGACGCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCCGCCACCGAGTACGGGATACCCACAGGCACGCTGTACGGCCGCTGCAAGCGAGAGGGCATCGAGCTGTCCCGCTCCAACCCTACGCCTTGGTCCGAGGACGCCATGGGGGAGGCGCTCGAAGCCGTCAGGGTGGGCCAGATGTCGATCAACCAGGCGGCCATCCACTACAACCTGCCCTACTCTTCGCTCTACGGCCGCTTCAAGCGCTGCAAGTACCAGATCCAGGTCAGTATGCTGCGTCTTACTAGAGGTGCCATATTTCCTACTTTGAGGATATACTTACCTACCAAAACTTTACATCGAGGACACATAACTGGTCCAAGACTGGAGTATGTGCCATATCTAGAGCTAACGGACCAGTCGATGGGTGTCCCCCCGCACCTCCCGCAAGAGATGTCCGCGGAGGAGCTCCCGGGGCAGTTCGCGGAGCACTCGGCGGCGCCGGCGGAGCCCTACAGCCACATGTTCCCCGAGTGCGAACAGTACTACCCCTACAGCGGCATCACCACCAGTTGA
- Protein Sequence
- MPGPGPALVKCEPHSDDEDPHYHPPYIASQKLATQLVSIKLEREGSGEENVSTDLLRHLQQCLEEPLAPAAPAATPVRARLPAPPAAPLETLETLEPATHAAHPTLLGTTLMDRRATMLSTAELPDSSDFVPLLAVKDEPLSEGEQHQLSSDDTSDSGGGGGAGVGARGSPKSWSQRDMDSALDALRNHRMSLTKASARFGIPSTTLWQRAHRLGIGTPKEGGARSWGERELRAALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLRRALDAIRCGASSVQRAATEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQIQVSMLRLTRGAIFPTLRIYLPTKTLHRGHITGPRLEYVPYLELTDQSMGVPPHLPQEMSAEELPGQFAEHSAAPAEPYSHMFPECEQYYPYSGITTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -