Nnit028689.2
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374645.1:6818722-6835750[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.8 7.5e+02 1.8 0.6 2 20 452 469 451 470 0.90 2 10 4.9 5.4e+02 2.3 5.7 2 23 477 499 476 499 0.89 3 10 0.11 12 7.4 0.9 2 23 505 526 505 526 0.97 4 10 0.00048 0.053 14.9 3.5 2 23 636 657 635 657 0.96 5 10 1.3 1.4e+02 4.1 0.3 2 23 673 694 672 694 0.95 6 10 2.5e-06 0.00028 22.0 2.2 1 23 700 722 700 722 0.98 7 10 0.00013 0.014 16.6 1.8 3 23 729 749 727 749 0.95 8 10 9.4 1e+03 1.4 1.0 2 21 756 775 755 776 0.90 9 10 1.6 1.8e+02 3.8 1.6 1 19 785 803 785 804 0.81 10 10 0.044 4.9 8.7 0.7 3 23 817 838 816 838 0.95
Sequence Information
- Coding Sequence
- ATGTCTAACAATAAATGTCAAAAAGTGCCCAGGAAGTCGAAGTTAATACCACGCGAGTATTTGGATGACGTGCAAGATGTTATACAAATGCAGGCAGACGATAAGGAATCTGTTTTACAAAAAGACCCAAATCCAGTCCCAGGTACATCGTTCTATCGTGTTCCCGCATTAGTACCATTCACCGTCAAAGTTGAAGTCGAAGAGTTTGTTGAAAAACCGTCTAACGATACGACTAATAAAGATTTTGATGCTGAAGAAGCACTTGCAGCTGTAAATGTCATAAAACAGGAAATGAGGGACTTTGATGAATGTATAAACTCAAATAAGACAACATCAATCTCAAAAAAAAAAGATTATACCAGATGTCCTAGACCTAAGTTACCTGTCCCTAAGAGAGATTCCAAGCCTGCTGATATTCGCATTTGTAAGTTAGACCCTAAGGTGGTTTTTGAAGAATTGGAAAATCTCGCCAAGACTACTACTAGTCTCGCTGATAAAATACTAGATATTGAAATAAGAAATACGTGGGGAAGGTATCTCTACGAGGAATCTGAAGAGTCTACTAGTGACGACACCGCATCAGAAGAATTTTCTAATAATGATTACAGTGTGAGTCGGATAATTGTGAAGGAAGTCTACAGTAATTTTATTCATGAAACGAACAGCGAAACTGGGATCAGTAAGCGACTGCAACTTAAAGATTCAGCAGGGGCATCAACGACAAAAGATGTAAAACCGATTACTTTTAGGGACATTTATGGAAATAAATATGACCATGAATCGACGAACAGTGTTGAAGAAGAAAATGATTTGGATGTCAAAACGAGCATACCGGAAGTACAACCAACTACAAACCCCGTATTTTACGCATCACAGAAAGTTTTCCCTGCTATAATAAAGAGTGAACCATTGGATACAGAAGAGTTAAATGAAAACATTGTAATAAAAAATGAAATAATCGATGAAGAAGAGACACGTGTTAATGAACATACTAGTCTCAATGAGTATATTAGTGTCAAAAAAGATTTTAGTGTCCAAGAATATAATATGAGTGACAGAGTGAATGAACATACTATTGTCAATATAGATCACAAAAAGCTGGACTATGAAGATTTACTGGCTAGAATGTTTGGCGTGAAAAAAACGGATACCGACACCTCAATAGTAAAACAAGAACCAGAGGAAGAAATATTTGCAGAAGAAATAGGCGAGGATGAACAATTTGTAGACGATCTCATAATCTGTAATAGCCAAGACAACACAGACGAAGTATCTGACAAGGAGGATGATGACGAATCCGTTGAAATGTCTGACGAATTATCGTCTGACGATGAAGTACCGAAAAATAGTAAGGTTTGCAAGAAGTGTAAATTTGTAGGCAATAAAGCGGATTTCAAAAATCATTTGGAGTTTTGTAGTGATCCTTTAAAATGCACAAAGTGTAATCATAATTATGCGACTATGAAGTCGTACGTAAAGCACTTTCACGAGAAGCATAAATATGCTCGTAATACTTGCCCAGACTGCGAGAACGTATTAGGGAATAATTGTACCTTCGTAAATCATATTAAATCTCACGTACATCAATCATTTTCAAAAGTGCGGAGTCTTAAAACAACAGACACGGAAACTAAAGTCGTGTGTTTGAACAAATGCAAGAAATGCAAGGAAAATGTCGTAGCCAAACGTTTGTTTGATCATTGGGAAGCGCATCTCATTATTACTAATAGAACGTCGCAGTTGAAAAACACACCATCTTCGAGTAGCACCGATGAAAATGAAGGGGAGAAAATGGAAGTGAATAAAGCAGAACAATTTAGAGCGAAAGTTTTGAGTGAAGCCGCCGTGAAAGATCTTATTGATAGATTACTAAGGAAACCGGAATCTCACTGGAAAGGGAAATCTACATGCAGTATCTGCAAGAAGTCCCTGGATAGGAAGCACAACTTCAGACGCCACCTGATCGAGCATCTATTGACGAACGCCTTGCACAATTTCGAGCGATACAACTGCTTAAAATGTCAGGTGTGCGCTGCAAAGTTCTGGAAGTCGGATGTCTATAAAGAACATATGCGAGAGCACGCTTGCCTGCCGCTGTACAAGTGTGAATTGTGCAGCAAGGCCTTCTCGGATTCCAGCAACTTCTCGAAACACAAGAAAATTCACAATTTGGGCACAATGCATTGTGTTGTATGCAAAAAGAAATTCCGCGATGCCGGCCAACTGAAGAAACATGTACAGCTACACGATACCATCGGGCCAATCAAATGTGATTGCTGCAGCAAAGTGTTCTTGGACGAGACGGTCTACCGTCGCCACCAAAGGATTGTGAAGCAAAAGCAGAACCCAGTCTTCCATTGTAGGATATGCAAAACTAAGTTCACTTCCGTCAAAATGAAGTGGGACCACCAGTGGGAAGTTCACAAAGTGAGGGATCACCAAGCGGATTGTCCGCTGTGCCTCAAGCCGTTCAGGAAGTATAATGATGTGAAACAGCATTTGTATAAGTTTCACAGACAAGAGATGTCGATCAAGGAGATAAGGAATCTGTACGAGCAGGCTATAAGTAACTGTAAAGCTAGGCGTCCAGCGGGCAAATCACAAAAGTGTTGTGTGAATAAATTAAGGAATGGATAG
- Protein Sequence
- MSNNKCQKVPRKSKLIPREYLDDVQDVIQMQADDKESVLQKDPNPVPGTSFYRVPALVPFTVKVEVEEFVEKPSNDTTNKDFDAEEALAAVNVIKQEMRDFDECINSNKTTSISKKKDYTRCPRPKLPVPKRDSKPADIRICKLDPKVVFEELENLAKTTTSLADKILDIEIRNTWGRYLYEESEESTSDDTASEEFSNNDYSVSRIIVKEVYSNFIHETNSETGISKRLQLKDSAGASTTKDVKPITFRDIYGNKYDHESTNSVEEENDLDVKTSIPEVQPTTNPVFYASQKVFPAIIKSEPLDTEELNENIVIKNEIIDEEETRVNEHTSLNEYISVKKDFSVQEYNMSDRVNEHTIVNIDHKKLDYEDLLARMFGVKKTDTDTSIVKQEPEEEIFAEEIGEDEQFVDDLIICNSQDNTDEVSDKEDDDESVEMSDELSSDDEVPKNSKVCKKCKFVGNKADFKNHLEFCSDPLKCTKCNHNYATMKSYVKHFHEKHKYARNTCPDCENVLGNNCTFVNHIKSHVHQSFSKVRSLKTTDTETKVVCLNKCKKCKENVVAKRLFDHWEAHLIITNRTSQLKNTPSSSSTDENEGEKMEVNKAEQFRAKVLSEAAVKDLIDRLLRKPESHWKGKSTCSICKKSLDRKHNFRRHLIEHLLTNALHNFERYNCLKCQVCAAKFWKSDVYKEHMREHACLPLYKCELCSKAFSDSSNFSKHKKIHNLGTMHCVVCKKKFRDAGQLKKHVQLHDTIGPIKCDCCSKVFLDETVYRRHQRIVKQKQNPVFHCRICKTKFTSVKMKWDHQWEVHKVRDHQADCPLCLKPFRKYNDVKQHLYKFHRQEMSIKEIRNLYEQAISNCKARRPAGKSQKCCVNKLRNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -