Nnit028791.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374645.1:8766824-8769496[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4 1.5e+02 4.0 0.0 2 23 14 36 13 36 0.91 2 13 0.76 84 4.8 1.8 2 23 46 68 45 68 0.95 3 13 0.0026 0.29 12.5 4.7 3 23 75 95 73 95 0.95 4 13 0.049 5.3 8.6 1.3 1 23 104 127 104 127 0.94 5 13 0.59 65 5.2 0.5 1 21 164 184 164 185 0.94 6 13 0.34 37 5.9 0.4 3 23 193 213 191 213 0.91 7 13 0.47 52 5.5 0.3 2 21 226 244 225 245 0.88 8 13 0.053 5.8 8.4 1.1 2 23 250 272 249 272 0.93 9 13 0.00046 0.051 14.9 1.0 2 23 280 302 279 302 0.96 10 13 0.41 45 5.7 5.5 1 23 311 334 311 334 0.92 11 13 0.00011 0.012 16.9 2.3 1 23 340 363 340 363 0.97 12 13 0.11 13 7.4 4.5 1 23 528 550 528 550 0.96 13 13 1.7 1.9e+02 3.7 0.4 2 23 556 578 555 578 0.88
Sequence Information
- Coding Sequence
- ATGATTCAAATAAATCTAGAAATGTTGGATGCAGATACCACCTGCGACATTTGCTATGCTGAATTTCTGGAACCAGAAGACCTGAAAGTCCATATCGATCAAATGCACTCAACTGATATAGGACTATACAAGAAAAAATGCCAATTTTGTATAGAATGTTTCACCGATTTGGAGACATACGCTTACCATTTAAGAGATGATCATTTATCCACATTAAAGTGCTGTAAATATTGTAATCGAGTGTTCAGTGACATGGACACCTATAGAAAGCATGAAAGCAAGCATTATGTACATGTCACTATGTCCAAATATTCATGTAGCAACTGTAAAATGCTATTTACTAATACAATTGAGCTTGAACAACATGAATATAAATATCATATGGATAGTAAAGATGGAGTAATTCTCCATGAGTGCCTACCAATCCTCTCCTCAATATTAAATATAAAAGCGTTGAGTTTTCTTCAGTCGTTCGGGGAAGAGGTTGACTATTTCTGTGTTAGCTGTGAGTATAGCACTAAAAACACTGCCGACTATATAAATCATTTGAAAAAACTAGACTGCCGGTCGCTAGCTTGTGACATGTGTTCCTCTGTGTATAGATACAGAACAGGATTAGCGAGACATTTTTTCCAGCACCCAGAATGTTCACATGCAAGGGATAAATTCTCAACGAAATGTCCGGAATGCCAGAAACTGTTTGATATCAAAATGTTAAAGGAACACTCAAGAAACTGTAAGGTTATCAAATGCAAGAGCTGCAACATCATTTTTGACTCTATGTATGATTTTTCGAAACACCAGACTGAAAAACACCCATCTGCAGTATTGCTGCAAACATGTAAATATTGCCACAAATTATTTGCTGGCTCCAAAGCATTAGAAAAACATATAGCAAGGGTGCACGCTCCAGATCTACATCTTTATAAATATGTCTGCGTTTACTGCAAGGATATATTTAAACACCCCAAACACTTGTTTTCTCATTTCTTCTCAACTCACAAAGATTTACAGCCGTACACATGCAAAATTTGTGATAAAAAGTTCCGTGTTAGAAAGCGTTTTACAATTCACATTAAATTAGATCATAAAAGCATTGGGTTTGTAGAATTCGATGACAAATACCATGTTTTCTTTACTGATAAAAAGTCTGAAAAACCTTTTACCCCACCAACCATTACAGAGATAGGGTTACATAGTAAAGAAATTTACGAAATGAGGACTGGTACAATGATTGAAAACACAATTAACCAAGTCAAAGAAAGTGACAAAATTAACTCAAAAAAAGTCAATTTTGACACTGAAGATAAAGGTAACAGTGAAGTGAATTTGGTTGATTCTGATGGTAGGAGTGCCACTGACACAGAAATAGAGGTGAAAAAAGAACACCCAAGAAAAAGAGGTAGGAAGAAAACGAACACTAGGAAAAGGGGTAAAAAACCAGCGGTGGAATCAGATTCATCTGATAATGAAACATTGCTGAACATAAAAAAGAGACAGAAAAAACTACACAGTGAAAAAATACGCAAGGCTACATGGAATAGAACGAAAAAGAGAGACCTAAATGATAAACGGAAAAGATTTATTTGTAACATTTGCAAAAAATACTGCTATACTTTCCAGAACTACAACAATCATGTCAGTCTGCACTATAAGAGTATAACTAAATGCATTAAATGTGCTCAAGACTTCAGGTCCACTGAAGAACTCAACGAGCATTATGCAAATAATCACTCATCTTCACAACTTACTGAAACACTTAAAAATCTATTGGAAAAACGCAAGAATCGTAATCTCGCCAGTGAATTAAGTAATGCAGAGAAATTTCAACTCACTATAAAAAAGGTAAATGTAAAAAATGTAGAAGGGACTGCAACATTAAAACCGATATCGGACAATGCACTGTCTGTGCAAAAATTTATTGAAAGTTTTACTCCTGAATCAGAGATCCCCAAGAAAGATATTGTTATCAATTCAAATGTGACTATAAAAGCAGTAAAAGGTGTCCATGTACCTCCAAAAATCACACTTATCAAATGTAGTATGGAACATACAGATCTGGAGTCAACAAATCTAGCAATGCCTGTAAAATTCAAGCAAGTTGCTAATGAGGAGCCAAAAGCTACACTTAAAATTGTGTTAACAACTACAGAGAAAACAGAAGAGAACAATGTTATGTATGAAGATGATAACATACAATCAGAAGGTGCTTTCTTAGACGACTCCGAGACAGTTATACCAGAAGTAGCACAGGAGGTAATGCTTGAAGGGTCTGAGGAGAACTGCAACACCATACAAATACCACATAAGGTTATAATACCAAAACTATCAGCAGGCTGTAAAGAGTTAAGCATTGCTCATATGCAGTCAGAAGCCCCGTTTTACAAGATAATCAAAGTTAAAGAGGTCTCAAAATCTCCAGAGCCACCAGCAGATCAACCGAAAAAGGATATAAAGTTACCTGATGGGACTAAATTGGTTAGTGTGAATCCTCTAGCTCATTTATTAGGTGATACACCATTTGAGAAGATATTTAATGGCACCAGGTATAAGTACCAGAAGCCGAAAGATTTCGAGGCAGCTATAGCAATGGCGCTGTTGAAACTAAAGAAACCCGAGAAACCCGCAAAGACTGTAAAGAAAGAGAAGAGAAAAGCTAAAACTAAATCGTAA
- Protein Sequence
- MIQINLEMLDADTTCDICYAEFLEPEDLKVHIDQMHSTDIGLYKKKCQFCIECFTDLETYAYHLRDDHLSTLKCCKYCNRVFSDMDTYRKHESKHYVHVTMSKYSCSNCKMLFTNTIELEQHEYKYHMDSKDGVILHECLPILSSILNIKALSFLQSFGEEVDYFCVSCEYSTKNTADYINHLKKLDCRSLACDMCSSVYRYRTGLARHFFQHPECSHARDKFSTKCPECQKLFDIKMLKEHSRNCKVIKCKSCNIIFDSMYDFSKHQTEKHPSAVLLQTCKYCHKLFAGSKALEKHIARVHAPDLHLYKYVCVYCKDIFKHPKHLFSHFFSTHKDLQPYTCKICDKKFRVRKRFTIHIKLDHKSIGFVEFDDKYHVFFTDKKSEKPFTPPTITEIGLHSKEIYEMRTGTMIENTINQVKESDKINSKKVNFDTEDKGNSEVNLVDSDGRSATDTEIEVKKEHPRKRGRKKTNTRKRGKKPAVESDSSDNETLLNIKKRQKKLHSEKIRKATWNRTKKRDLNDKRKRFICNICKKYCYTFQNYNNHVSLHYKSITKCIKCAQDFRSTEELNEHYANNHSSSQLTETLKNLLEKRKNRNLASELSNAEKFQLTIKKVNVKNVEGTATLKPISDNALSVQKFIESFTPESEIPKKDIVINSNVTIKAVKGVHVPPKITLIKCSMEHTDLESTNLAMPVKFKQVANEEPKATLKIVLTTTEKTEENNVMYEDDNIQSEGAFLDDSETVIPEVAQEVMLEGSEENCNTIQIPHKVIIPKLSAGCKELSIAHMQSEAPFYKIIKVKEVSKSPEPPADQPKKDIKLPDGTKLVSVNPLAHLLGDTPFEKIFNGTRYKYQKPKDFEAAIAMALLKLKKPEKPAKTVKKEKRKAKTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -