Nnit000920.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374627.1:18582185-18591018[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.16 17 6.9 0.2 1 23 85 108 85 108 0.94 2 14 0.0023 0.26 12.7 0.3 2 23 137 159 136 159 0.92 3 14 2.1 2.3e+02 3.4 0.2 3 23 410 431 408 431 0.92 4 14 0.04 4.4 8.8 0.2 1 21 439 459 439 460 0.94 5 14 0.0056 0.62 11.5 0.4 2 23 470 491 469 491 0.95 6 14 0.65 72 5.0 2.4 1 23 507 530 507 530 0.94 7 14 0.0069 0.76 11.2 1.0 1 23 539 562 539 562 0.95 8 14 0.57 62 5.2 1.1 1 23 573 596 573 596 0.90 9 14 0.13 14 7.3 2.6 2 23 638 660 636 660 0.88 10 14 0.78 86 4.8 0.5 1 23 665 688 665 688 0.91 11 14 4.1e-05 0.0045 18.2 2.3 1 23 694 716 694 716 0.96 12 14 6.3e-05 0.007 17.6 1.2 1 23 723 745 723 745 0.98 13 14 1.1e-05 0.0012 20.1 2.9 1 23 750 772 750 772 0.96 14 14 0.041 4.5 8.8 1.0 3 20 780 797 778 798 0.88
Sequence Information
- Coding Sequence
- ATGAATTCCGACGACTCTGATGATGAACCACTATCAATTTTGGCGGCAACTAAAAATCTATGTTCTGAGAAAATAGAAATCAAAAAAATTAACATCAGAGATAATGATCCTAAGAAAAAGAAGAAAAAATCGACTGAGACAAATCAGTTGGCTTTGACAATAAAATTAAAACAAACCGAACCTGAGAATAAATTGCTGGAACGGCCTACTGATGTATGGCTGTACATGAAAGACCTAAATCATGCTGGACCATATAGTTGTTTGTTGTGCCCAGAATGGTTTATAAACAAAACTAAATTGATGGTTCATTATATCCTGAATCATAAAAAGGATTACTGTGGGATTTGCCGATATTTTGTGCTTGATAGAGAAACATGGTTCAAACACTTGAAATTTCACATTCCATGGTCATGTTCACAGTGTAATGAAAGCTTTAATTCTGAAACTGAAATGCGTCAACATCTGAGTGAGGCTCACAATTTAGTACACTGTCGTTTATGCCATTTCAGAGTATCTGGCGATGATCAATACAATGCCCATCTCTTTCAAAAGCACAGTGTCACTAATGTTGCAAGTAAAAATGAAGAAATAGTATGGGCTCATGAATATGACGGTAGTCTCAAGTTCATCTGTGTATTATGCTCCAAATCCAATAATTTGTCTATGAATTTTTTTAACCACTACATGGGTTATCACCATTTTACACTGAAGTGCTTTTCAAGACTAATTTCTGGGAAGGATAATATACCATTTACTGTTGATGGAGCTGATGTCAGCTCTCAGTTTGTTGATATTGAACTTAAAAATCAATTGAAATTTGGTTACACTGAATTAGAAAAAGGTGTAGAAAAAAAAGGTAATGATAATGTAGAGTCAGACAATGCTGATAGCAATAATGTATTAAATGTTCTCATACCAGAAATTAAACAAGAAGTATTGAGTGAAACAGAAGAAATGGAAGAAAGTGAGGAAATGAAAAAATGTGAAGAAGTAACAAAGTCTGAGGAAATGCCAAAGAAAACAGAGAAAAATGAAAATAATGAACTTTTCAATAGTTATGAAGGTGAAGAAGACTTTGATGTTACATTGGTGGAATTGATTGTGCTGCAACAATGCTACTTTGACTACATCGATTATACAATCGACCAGATAAAATCAAAAATTTTACCTGAAGCATCATCAATAGATTATCAAAGCATTAAGAAAGATACCCTGATGCAAATCAACTGTTCATTGTGCACGACAAAGCTTGATTCTTTACAAGCGTTCACTATACACATCGGAAAGATGCATTTAGTGAAAACAATGCCATCATTCTCATGTAGAGTATGTACTACTACATTTGACAGTCTACAGGAGTTTGAAATTCATGTCAATGAAGAAATGAAGGACTTTGATGACTTATGGATATGCCAGTTTTGTGAGAAAGAGTTTGACAATAGAGAAGCAACTCGTCGTCATTTGAATGAGCATTGGGACATATTAGAATATGACAATTGTTTTAGCCCTCATTTAGGATTTAAGTGTAAACATTGCCCCACTTTATTTTGGAATGAGACAGATAGAAAGACTCACCAAATCAGAGTACATTTTAGCAGAAATAAGGAAGATTATTATAAATGTGAAAGTTGCTCAGAAGTATTTAATGATAAGGAGTGGTTTGTCTACCATTACTTACAAAAACACCAAACTGATGGGAATACCATGGCATATCTGTTCAAATGCTGCTTGTGTTCTGTGGTGCTTTCCACAATGGATGAGATGAGAAAACACTTTGGTGTTGACCATCCAGAGGCCAGGAAGCGCTTCTGCTCTTTGGATTCTTGCCTTTATAGGCCCCTGAGTCATAGGAAATCTTTTAAAATTCATGTCAAGTTAGTTCATAATTCTACAAAGCGTCGGGATCGTTGTAGCTGCGTGATCTGCGGGCGGGATTTTTCAAGTTCTCGAGCATGCTCGACGCACATGGCCCAAGTTCACGGCCCAGGGAAGTTCAAGTGCAAGTTATGTAATGAGGTGATGTCTACGGGTGATGAGAGAAAACTCCATTACCTGATTCGTCACCCGGGAAGGCATCCTTTCTCTTGTAACGAATGCGGCAAGTCGTTCCAGTATAAGTCTTCGCTCTACATGCACAAGCAAGACCATTCGCCGAATAAACAGAGCTACACCTGTAATTATTGTGGGAAGGTCTTTCTGAAGAAGGACTCGTTCAGGGAGCACGTGCAAATCCACGAGGGCCCCCAGCACGCGTGCTCGTACTGCCCCAAGCGGTTCGTGCAGCGGTCCAACATGCTGCGGCACGAGCGCCGCCACACCGGCGAGCGGCCGTACGGATGCACGCACTGCGACCGGACCTTCGCCGATAAGGGCGCTTGTACTGCGCACGCGAGGTGA
- Protein Sequence
- MNSDDSDDEPLSILAATKNLCSEKIEIKKINIRDNDPKKKKKKSTETNQLALTIKLKQTEPENKLLERPTDVWLYMKDLNHAGPYSCLLCPEWFINKTKLMVHYILNHKKDYCGICRYFVLDRETWFKHLKFHIPWSCSQCNESFNSETEMRQHLSEAHNLVHCRLCHFRVSGDDQYNAHLFQKHSVTNVASKNEEIVWAHEYDGSLKFICVLCSKSNNLSMNFFNHYMGYHHFTLKCFSRLISGKDNIPFTVDGADVSSQFVDIELKNQLKFGYTELEKGVEKKGNDNVESDNADSNNVLNVLIPEIKQEVLSETEEMEESEEMKKCEEVTKSEEMPKKTEKNENNELFNSYEGEEDFDVTLVELIVLQQCYFDYIDYTIDQIKSKILPEASSIDYQSIKKDTLMQINCSLCTTKLDSLQAFTIHIGKMHLVKTMPSFSCRVCTTTFDSLQEFEIHVNEEMKDFDDLWICQFCEKEFDNREATRRHLNEHWDILEYDNCFSPHLGFKCKHCPTLFWNETDRKTHQIRVHFSRNKEDYYKCESCSEVFNDKEWFVYHYLQKHQTDGNTMAYLFKCCLCSVVLSTMDEMRKHFGVDHPEARKRFCSLDSCLYRPLSHRKSFKIHVKLVHNSTKRRDRCSCVICGRDFSSSRACSTHMAQVHGPGKFKCKLCNEVMSTGDERKLHYLIRHPGRHPFSCNECGKSFQYKSSLYMHKQDHSPNKQSYTCNYCGKVFLKKDSFREHVQIHEGPQHACSYCPKRFVQRSNMLRHERRHTGERPYGCTHCDRTFADKGACTAHAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -