Basic Information

Insect: Nymphula nitidulata
Gene Symbol: -
Assembly: GCA_947347705.1
Location: OX374631.1:4096509-4106439[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0015 0.17 13.3 3.0 3 23 569 590 567 590 0.93

2 8 0.00015 0.017 16.4 1.7 2 23 608 629 608 629 0.98

3 8 0.012 1.3 10.5 8.5 1 21 634 654 634 656 0.95

4 8 0.0013 0.14 13.5 0.3 2 23 674 695 673 695 0.97

5 8 3.8e-06 0.00042 21.5 0.7 2 23 702 723 702 723 0.97

6 8 0.00015 0.017 16.5 0.6 1 23 729 751 729 751 0.98

7 8 0.0035 0.38 12.2 1.8 1 21 757 777 757 778 0.95

8 8 2 2.2e+02 3.5 1.6 1 21 800 820 800 821 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0015	0.17	13.3	3.0	3	23	569	590	567	590	0.93
2	8	0.00015	0.017	16.4	1.7	2	23	608	629	608	629	0.98
3	8	0.012	1.3	10.5	8.5	1	21	634	654	634	656	0.95
4	8	0.0013	0.14	13.5	0.3	2	23	674	695	673	695	0.97
5	8	3.8e-06	0.00042	21.5	0.7	2	23	702	723	702	723	0.97
6	8	0.00015	0.017	16.5	0.6	1	23	729	751	729	751	0.98
7	8	0.0035	0.38	12.2	1.8	1	21	757	777	757	778	0.95
8	8	2	2.2e+02	3.5	1.6	1	21	800	820	800	821	0.95

Sequence Information

Coding Sequence: ATGGACGGATTTTGTAGAGGATGCTTAATAAGATACTATGAACCCTCTGAACTTCTTTTATACACGGAGAAAATCCGACGATTATTCATTTACTCCACTGGTATACAAGTAAACCATGATGATGCTGCAACATTCCAATTATGCAAAGACTGCTATGTCAATATGAAAATGTCGTGTAAGTTTAAAAAGCAATGTAGGATTTCAGACAAAAAGTTCAAACATTATTTATCCCTAAAAGAGGCTGGAGATGCTTTTGAATTTTCCACCTACATCAAAAACAATGATGACAGTTTAAAGTTCCCTTCTCTTAGCAGGCAGAGTACACCAGCCCCACATAGATCTGGTGATGATGATAATGAATCAACATGCACAAGTATCCGTAACTTCATGACTGACATCCTCCAGGGTGAAGAGGTACCTGATAATGAAGCTCGGATCATAAAGGAGGTGATTGAAGAACAGACTGATATACTAGATGATTCTCTGGACTCTCATTGGTTACAAGATGATGTGTCTATTGATACAGATTTCAGATTGGACTTTAGTTTTAGCCCACTATCAACACCACACTCTACTAATCATAATGTATGCTACACACCAAATAAACAATTTGAAGTTGACTCAAATAATTTTAATAAAGAATCTAAAAAAATAATTGAATTGCCAATTGAATATGATACAAATAAAAATCATGATTTTAATGAGGAACATCCATTACAAGATAAACTACCAAATGAGGATGATAAATCAAAAGATGACTCAAATCACCTTAACTCAGAATTAAATCATGATTTGATCAATGAAAGCACTGAACCTGAAGATGTTTTTGAAGATATCCATCAAAATGTAAATTATCTAGCCCATAGTGAAAATGATATAGCTGTACGAAATCTTCTTCAATCTAATAATCAAGATGACAGTATGCAAACAGAAAGTTTGTATGCTGTTAAAGTTTTGCGAAATGAAGCATCTCCAATCCACCAATCAGATATTTCAGATGAAAATATGTTAGAACAAACTGATAATATTGTTGATATTGATCAAAATAATTATGAAATTCACGATGGAAATCAATTCACTCAGAAATATATTGATAATAATGTAAATAACAATCAAGGTAATATTTCTCTTACTATACAAAATGGCAATGAGGTGATAATAAAAATTGGAGAACCAAATAAAGACAGTAATCATTTTGATGAACAATCTGAAAGTAATGTAAATATGAGTAAAGAAAAACATCACACTGTTAATACACCCGTGAATCAAGCTGGTTTAAACATAAAAATAAATAATAATACATTATTGAATGAGGAATCTAAAGATATAACATCATCCAAAAATGTGGAAAGTCCATATGACATGAATCATGAAGATAAACATGGCAGCAAAGATGAAAAATTGGAAGATGTGTACAAGAGTGAAGAAAATCAACTTATATCACTAGATGATTTGCTTAATTCCCATTCGGAGTACAATCTGGGCCCGGGAGCTTCGACCCCAACAATAAATAATATAATCTTTGGAGACAAATTAGATTCAGATGAAGATAGTAACAAATTAGACAAAATTGCAGATAAACTAAGTATACAATCTGGAGGAACAGACATTCTCGATAAAATGTTAAAACATGGTGTGAAAGAGTTCCAAATAGACACCCCTAGTCCGAAAGTCGAAAGTATTTATGATATAGCAAATTCCCATTGCAATAGTTGCGACAAAACATTCAAAAATACAACAGCGCTAAAAATACACTTAGTAAGAAAACACAATGTCAGAGTACCACATATAAAGAATAGAAATTTTGACTTTATGGTCAGGACCTGTGAAGTATGTGGAGAAGTCTTAAAACATTTTGCTTCCTTTCAAAAACATATGAAAACTCACGAGGGTTACACACATCAATGTACTAAGTGCAAACTGAGGTTTTCTTCAAAAAACAAGTTAAAAAGTCACATGAAATGCCATGTTCCTATTCAAGATGTTAAGAAACAACCATCTAAGGAGTCTAAGAAAATCGTTTGTACTATTTGTGGACGCGAGTATTTAAATTCAGGGAATTTCTCACTACACATGAAAAGGCACAACCAAGATTATGTTGCAACATGCAATCAATGTGGCAAAGGATATTATAGGAAATCGGATCTGATAAATCACTTGAGACTACACTCTGGAGAGAAGCCTTTTTCCTGCGAGTATTGCGAGATGCGGTTCAGAATACGATACGCATTAGTCAAACACGTTCGGGTGCATCTGGCTGAAAAGCATTTCCAATGCGCGCATTGCGATAAGAAATACGTACTCAGAAGCGATCTGGTGTACCATTTAAAGCATTCCGCATCCTGTATGCAAGCGAGGGCGGGCTTGAAACCTAAACGTAAAAAGGTTCCGAGAACGTACATTTGCTATTATTGTAGGGACACTTTTTTGAACAAGAAGGATTTTGTGAGACACCAGAAGAACTTCCGACCTTGTGAGAAGATGCACGATGATCCGGCGTATATGAATAATCGGATCGTCGAATTGCCAATTCTTTATGTTGAGAATTCGGAGGAGATGGTTAGGCTTAAACAGGAAGAAGAAAGTGAAAATGAAGATGTTGATATATTCGAGATTTAA
Protein Sequence: MDGFCRGCLIRYYEPSELLLYTEKIRRLFIYSTGIQVNHDDAATFQLCKDCYVNMKMSCKFKKQCRISDKKFKHYLSLKEAGDAFEFSTYIKNNDDSLKFPSLSRQSTPAPHRSGDDDNESTCTSIRNFMTDILQGEEVPDNEARIIKEVIEEQTDILDDSLDSHWLQDDVSIDTDFRLDFSFSPLSTPHSTNHNVCYTPNKQFEVDSNNFNKESKKIIELPIEYDTNKNHDFNEEHPLQDKLPNEDDKSKDDSNHLNSELNHDLINESTEPEDVFEDIHQNVNYLAHSENDIAVRNLLQSNNQDDSMQTESLYAVKVLRNEASPIHQSDISDENMLEQTDNIVDIDQNNYEIHDGNQFTQKYIDNNVNNNQGNISLTIQNGNEVIIKIGEPNKDSNHFDEQSESNVNMSKEKHHTVNTPVNQAGLNIKINNNTLLNEESKDITSSKNVESPYDMNHEDKHGSKDEKLEDVYKSEENQLISLDDLLNSHSEYNLGPGASTPTINNIIFGDKLDSDEDSNKLDKIADKLSIQSGGTDILDKMLKHGVKEFQIDTPSPKVESIYDIANSHCNSCDKTFKNTTALKIHLVRKHNVRVPHIKNRNFDFMVRTCEVCGEVLKHFASFQKHMKTHEGYTHQCTKCKLRFSSKNKLKSHMKCHVPIQDVKKQPSKESKKIVCTICGREYLNSGNFSLHMKRHNQDYVATCNQCGKGYYRKSDLINHLRLHSGEKPFSCEYCEMRFRIRYALVKHVRVHLAEKHFQCAHCDKKYVLRSDLVYHLKHSASCMQARAGLKPKRKKVPRTYICYYCRDTFLNKKDFVRHQKNFRPCEKMHDDPAYMNNRIVELPILYVENSEEMVRLKQEEESENEDVDIFEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -