Basic Information

Insect: Nymphula nitidulata
Gene Symbol: -
Assembly: GCA_947347705.1
Location: OX374639.1:13762172-13788701[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00018 0.019 16.3 6.0 1 23 291 314 291 314 0.96

2 8 0.024 2.6 9.5 5.4 2 23 322 343 321 343 0.95

3 8 3.3e-05 0.0036 18.5 6.2 2 23 375 396 375 396 0.98

4 8 0.00026 0.028 15.7 0.9 1 23 400 423 400 423 0.95

5 8 0.0025 0.27 12.6 0.3 2 20 439 457 438 459 0.93

6 8 0.13 14 7.2 2.7 5 23 493 512 491 512 0.90

7 8 7.8e-07 8.6e-05 23.7 2.3 1 23 551 573 551 573 0.99

8 8 2.4e-07 2.6e-05 25.3 0.5 1 23 579 602 579 602 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00018	0.019	16.3	6.0	1	23	291	314	291	314	0.96
2	8	0.024	2.6	9.5	5.4	2	23	322	343	321	343	0.95
3	8	3.3e-05	0.0036	18.5	6.2	2	23	375	396	375	396	0.98
4	8	0.00026	0.028	15.7	0.9	1	23	400	423	400	423	0.95
5	8	0.0025	0.27	12.6	0.3	2	20	439	457	438	459	0.93
6	8	0.13	14	7.2	2.7	5	23	493	512	491	512	0.90
7	8	7.8e-07	8.6e-05	23.7	2.3	1	23	551	573	551	573	0.99
8	8	2.4e-07	2.6e-05	25.3	0.5	1	23	579	602	579	602	0.97

Sequence Information

Coding Sequence: ATGTGTGACCTAAAAGTCTGCAGGATATGTCTTCGGACCGATAACTGTGCTAAATATTATAAGTTCGAAGAGTTTTACCTCAAGTGTTATTATGAAGAGATCACTACTGTTCCGGTTAATAATAACGATGGACTCCCCAAATATTTTTGCTACCAGTGTGCCGCTTTGCTTAGCAAATATCATTACTTTAAAGAAAAGTGTTGTTTTACCCAGAAGACTCTCAACAAAATGGTGTGGACTGCGCCGCTCACTTACGAGACAGTCTGCAACATGTACTCGAAACAACTACCCATAATAAAGCGCGGCAACATAGAAATAATAAGAACCAATAAAAAAGTTAAAACCTTCAACATAGTCGAAGGCAAAGTGCTTCCTAAAACAAAATATAGACTGACGAAAAAGAACACTGATACTGAATCTTCGGATAGCGACGTTGACGGCGATTTTTACGTAGACAATAAAGCAGACAGCGACGATAGCGAAGACGATATACCTGTCTCAGAAATCTGTTTAGAAAAGAAAAATGTCAACCACTTGAATTATGATATATTTGAAGGGATTGAGGACACTAAAACTGTTGAAATACCAAAAGTGGAGCCGGCTGTAATAAAAGACGATTCTAATATACTAAAGAACCTGCTGTCCAAATCGAAAGGGAACAGGAAGATCACATTAGGGAAGAAAAAAAAGGAAGCCCCGGTTAGCGAGACTGAACCAAAGAAGTATAAGTTCACAAAATCAAAGGATGGGAAACTGAAGGCTTTACAGTTCTTGGACTCCGGTTTTTGGAGAAAGCTGACATTAAATGAGGAGGAGGCTTTGAAAGAGTTTCAAGCTAAAGGCCAGAGTGAGAAATATTTGCGAGCCGCTCACAAGTGCACGGATTGTCATAAACCTTTCTCTCAGAAGAATATGTTGGATAGGCATACACTTAGGAAACATGGGGAGGAGGTCGGTTCCCTCATCTGTCGGTTCTGCAAGATGCGCTTCAGACGAGCGTGCTTCCTGAGCAAGCATATGAAACAACATCTTACTAAATACGAGTGCCTCAGATGCAATTTGGTGTGTAATGTTGAGACTACAGCTTTATTCCACGAAGAGTATCACAGTGGTGTTATTAGAAAGTGTCCTCATTGCGACAAAGAATTCAAACATCTATCCACATTCTACACTCACTTGCGCACGCATAGAAGCAAGCACATGTGTACTCTGTGCGGCGAGTCCTTCGTCAGTCCGTTGGGGCTTCGGCAGCATAAGAGATTAAAACATGTTATGGAACCGGATAACCAGGTGACGGACGCAGAGAATAACATCTATTGCGAAGTATGCAAAATTACATTTGAGACTAAAGAGGCTTACACGAAACATCTGTTACATTCTGCCATGCACACTGATGACTTCACGCCAGGCGGTAAAGGACCTGACACGGAGCTGGTTGACGATCCGCTGGAAGATGACAAAGATGATAAGGATTCGGATTGCGGCAAACACTTCGCCTCTCAGTCGGAGTGCAGAAAGCATCACTTAGCACAACACCTTCGGGCGCCTTTCTATACAGAGAAAGACCGGGTTATATGCGAGATCTGTGGATCATCTTTGGCGCCTGGCAGCGTGGCGGCGCATCTAAACCAGCATACAAGAAGAAAGATATACACATGCGAGACGTGCGGGAGATCGTTCACCACCAACCACGTGCTCAGGAACCATATGGCGACACACACAGGTGAAAGAAATTACGCATGTAACATCTGCGGGAAGAGGTTCACACAGAATGGCAGCTTGAGTCTACATTACCGAACTGTACATTTAAAACAACCTTATATTAGGGATAGAAAAAAGAAGATAGACGAATCCAATATTGGAGCCTTCTTCGGAGCCGGTAAAATGGGCGTGAGAAAGATAAAGAAAGAAGACGCCACAGAAGAGGCAGAAGACCAGCACAGACTGAGTAAATGGGAGTCAGCGGTACTTCATGTGGTCACGCGCGACCTGGAAGGCACCGATGGCGTTACGTGTGCGACCGTCCCAGAAGGGAGAGAGGGACCATAG
Protein Sequence: MCDLKVCRICLRTDNCAKYYKFEEFYLKCYYEEITTVPVNNNDGLPKYFCYQCAALLSKYHYFKEKCCFTQKTLNKMVWTAPLTYETVCNMYSKQLPIIKRGNIEIIRTNKKVKTFNIVEGKVLPKTKYRLTKKNTDTESSDSDVDGDFYVDNKADSDDSEDDIPVSEICLEKKNVNHLNYDIFEGIEDTKTVEIPKVEPAVIKDDSNILKNLLSKSKGNRKITLGKKKKEAPVSETEPKKYKFTKSKDGKLKALQFLDSGFWRKLTLNEEEALKEFQAKGQSEKYLRAAHKCTDCHKPFSQKNMLDRHTLRKHGEEVGSLICRFCKMRFRRACFLSKHMKQHLTKYECLRCNLVCNVETTALFHEEYHSGVIRKCPHCDKEFKHLSTFYTHLRTHRSKHMCTLCGESFVSPLGLRQHKRLKHVMEPDNQVTDAENNIYCEVCKITFETKEAYTKHLLHSAMHTDDFTPGGKGPDTELVDDPLEDDKDDKDSDCGKHFASQSECRKHHLAQHLRAPFYTEKDRVICEICGSSLAPGSVAAHLNQHTRRKIYTCETCGRSFTTNHVLRNHMATHTGERNYACNICGKRFTQNGSLSLHYRTVHLKQPYIRDRKKKIDESNIGAFFGAGKMGVRKIKKEDATEEAEDQHRLSKWESAVLHVVTRDLEGTDGVTCATVPEGREGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00006553;
90% Identity: -
80% Identity: -