Basic Information

Insect: Nymphula nitidulata
Gene Symbol: -
Assembly: GCA_947347705.1
Location: OX374645.1:5469587-5484032[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.07 7.7 8.1 0.2 1 22 243 264 243 266 0.91

2 9 0.00096 0.11 13.9 2.6 1 23 303 325 303 326 0.93

3 9 2.1e-06 0.00023 22.3 2.5 1 23 330 352 330 352 0.98

4 9 0.16 17 7.0 0.4 2 23 360 380 360 380 0.95

5 9 0.00016 0.017 16.4 3.2 1 21 386 406 386 411 0.95

6 9 1.7e-05 0.0018 19.5 0.8 1 23 419 442 419 442 0.96

7 9 0.00034 0.037 15.4 2.3 1 23 448 471 448 471 0.97

8 9 0.00022 0.024 16.0 3.1 3 23 483 503 482 503 0.94

9 9 7.1e-05 0.0078 17.5 2.1 2 23 510 532 509 532 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.07	7.7	8.1	0.2	1	22	243	264	243	266	0.91
2	9	0.00096	0.11	13.9	2.6	1	23	303	325	303	326	0.93
3	9	2.1e-06	0.00023	22.3	2.5	1	23	330	352	330	352	0.98
4	9	0.16	17	7.0	0.4	2	23	360	380	360	380	0.95
5	9	0.00016	0.017	16.4	3.2	1	21	386	406	386	411	0.95
6	9	1.7e-05	0.0018	19.5	0.8	1	23	419	442	419	442	0.96
7	9	0.00034	0.037	15.4	2.3	1	23	448	471	448	471	0.97
8	9	0.00022	0.024	16.0	3.1	3	23	483	503	482	503	0.94
9	9	7.1e-05	0.0078	17.5	2.1	2	23	510	532	509	532	0.95

Sequence Information

Coding Sequence: ATGGATGACTCTGAGTTTATGTTGAAAAAAGTATGTTGTACGTGCTTGAGCCGTGATAGAAAGTTGTCGCAGTTGTGCAGACTAAAAGAAGGAATAAATAATTTATATTTGCTGCTTTCCTATGATTCTGAAGCATACAGAGAAGGCTTTCACAAAGACACAGCCAGTTGGTACATATGTTGGGAGTGCTGGGCCATTATGACGAAAATCAGCATGTTCCGGAGTCAGGCTTGCTCCGCACAGAGACTGTTATCAAACATTGCAGATGGTCAACTCAGACACCCCAACGCCTGCCTTTCACGCCTCACACTCACACATAAATCATCCATAGACATGAGAATTGAATACACTGATCCTATAGACAATTTTATTGACTGTGGACCGGACATCAAAACAGAAAGTGATGATGATAAACCATTGTCATTATTACATAAATCTCTGATTGACGACAGAACATACTCTGATGAAGATAATACAGAAACACTGAGCAAAACAAACAATAAATTTGATAATTCTCCTAAAGTTAACCCAATAAATAGTTGTCAATCACGTTTAAAAAAAAAGTCAACAGACAGCTTGAAAAGAAAGAAGAAAATGAAAGACACAAACAAAGTTCACCTCTCAGATAGAAATAAGAAATACTTTAGAGAGATTCGTTTGAATGAAGAGGAAATGCTTGATAGTCGGGCGAAAAGAAAAATGGCAGCGGTATTTGCTGACGCGCCATTCAAATGTGAGTCTTGTATTGAAGCTTATAAGAGCAAAACTGATTTGGATAGACATATAGTAGATGTTCATGTTATTAATGTACTTAAAAAGGGCACAAGAAGAACGCCTAAAGTTGCAAAGCCTGGGTCTAAGCCACGAAGGAACCGAGCCATGATGGACAAACGGACACCGTTCGGATATTTGTGTGCGGAGTGTGATAAGTACTTTGACAATAAAAACCAAAGATGGAAACACATACAGAGACATCACCGGGAGGGCTACAAGTGTACCACTTGTGGAAAGCGGTTTGCCTTCAAAAATAATTTGAGCAGACACGAGCAAATGCATCAGGGGCCTCCTCCCCGCGAGGAATGTCAAGTGTGTCATAAAATGGTGCGAGTGGATCTCCTAAAGATACACGCAAACATACACACGCAAAGAGACAGGTACAGATGCGCTGAATGCGACAAGTGTTTCGTGAGTCGGGCGTCTTACGAACATCATCTCAAGTACACGCAAGCACACGCAGCGATCGATATACTCAAGTACAAATGCTCTATGTGCGACAAGGGCTACCGGTCCCGCGGCGAGCTCCGCGACCACGTCAACTATCAGCATATGGATAAAACGCAGCACAAGTGTCCCATATGTGACAAGGCATTAGCGACGCGTCGTTGTATCACTCGGCACGTGCGAAGAGCACACGACGGTGTGAAAGAGAACGCCAAGGACAAGATATGCCAACAATGCGGGAAGACTTTCAGAGATAAGAAATGTCTCCGTGAACACGAATTCATACATACCGGCGAGAGGCCTCTGTCCTGCGAAATATGTGGCTGTACATTCCGACAGAGTGCTTCATTGTACACACACAAGAAAAGGGTACATAAGATATTTCCCAGTAAGAAGACCGTCACGTTGGTCGAAAGTCAAGAGAACTCTTAG
Protein Sequence: MDDSEFMLKKVCCTCLSRDRKLSQLCRLKEGINNLYLLLSYDSEAYREGFHKDTASWYICWECWAIMTKISMFRSQACSAQRLLSNIADGQLRHPNACLSRLTLTHKSSIDMRIEYTDPIDNFIDCGPDIKTESDDDKPLSLLHKSLIDDRTYSDEDNTETLSKTNNKFDNSPKVNPINSCQSRLKKKSTDSLKRKKKMKDTNKVHLSDRNKKYFREIRLNEEEMLDSRAKRKMAAVFADAPFKCESCIEAYKSKTDLDRHIVDVHVINVLKKGTRRTPKVAKPGSKPRRNRAMMDKRTPFGYLCAECDKYFDNKNQRWKHIQRHHREGYKCTTCGKRFAFKNNLSRHEQMHQGPPPREECQVCHKMVRVDLLKIHANIHTQRDRYRCAECDKCFVSRASYEHHLKYTQAHAAIDILKYKCSMCDKGYRSRGELRDHVNYQHMDKTQHKCPICDKALATRRCITRHVRRAHDGVKENAKDKICQQCGKTFRDKKCLREHEFIHTGERPLSCEICGCTFRQSASLYTHKKRVHKIFPSKKTVTLVESQENS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -