Basic Information

Insect: Nymphula nitidulata
Gene Symbol: -
Assembly: GCA_947347705.1
Location: OX374616.1:569992-572000[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.052 5.8 8.5 0.0 2 23 212 234 211 234 0.93

2 9 0.27 29 6.2 1.2 3 23 271 291 270 291 0.97

3 9 0.11 12 7.4 0.0 2 21 298 317 297 318 0.93

4 9 0.00011 0.012 16.9 1.4 2 23 342 363 341 363 0.96

5 9 1.4e-06 0.00016 22.8 0.7 1 23 371 393 371 393 0.98

6 9 0.014 1.6 10.2 1.2 1 23 399 421 399 421 0.95

7 9 3.1e-06 0.00034 21.8 2.8 1 23 427 449 427 449 0.97

8 9 0.00096 0.11 13.9 2.2 1 23 455 477 455 477 0.97

9 9 9.2e-06 0.001 20.3 2.5 1 23 483 506 483 506 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.052	5.8	8.5	0.0	2	23	212	234	211	234	0.93
2	9	0.27	29	6.2	1.2	3	23	271	291	270	291	0.97
3	9	0.11	12	7.4	0.0	2	21	298	317	297	318	0.93
4	9	0.00011	0.012	16.9	1.4	2	23	342	363	341	363	0.96
5	9	1.4e-06	0.00016	22.8	0.7	1	23	371	393	371	393	0.98
6	9	0.014	1.6	10.2	1.2	1	23	399	421	399	421	0.95
7	9	3.1e-06	0.00034	21.8	2.8	1	23	427	449	427	449	0.97
8	9	0.00096	0.11	13.9	2.2	1	23	455	477	455	477	0.97
9	9	9.2e-06	0.001	20.3	2.5	1	23	483	506	483	506	0.94

Sequence Information

Coding Sequence: ATGGAAAACGTAGAAAATACTTACTGCCGGTTCTGCGCCGAACCCAAAGGAGCAGATAAGGTTTTAAACTTGCAGGACGACGAAAAAAAATGTGAAATACATATAAAGTTGGCATTCTTGAACGCTCTGTACGTGAATGTGAACAGCGATGATATTTTGCCGAAAACAATATGTTTCGTTTGCTACGACTCTTTGAATAAAGCTTACGAGTTCTTAGAGAAAGTGAAAAAAGCACAGGAAGTGTTGACAAACTTATTTGCGCTCGAACAAAATCGTTTGTTTAGTGCACAAGAAGATGACAGAGGTGGCTTTGACGATTACCTTTCAGATGGTGCGGTGGACGAGGCCCCTGAGAGCACTGTTGACGTAAAAATAGAGTCTCCAAGTAAAGTAAGCAAATCTGAACTCAATAATTTATTAAATACCGAAGAAATCAAAAGTGAACCAAGAGAAGAGAATGATTCAAACATTTTAGAAGTTTTAAGTAAAGAAACTGGGACTGTAGACAATAATTCAATCGTACATGACATGATCATTGATGCTGCTATAAATTCCACGAATTTTATGTTATGTGCTAAAGATTTAGCTGAAATTAGTAAAAGAGATATAAAGACATGGACTGACTATCCATGGGTTTGTGCATTCTGTAATATTGAGTTTATAGACATAGACATGCTTCGGGCTCACTCTAAATACGCCCATGGAAAATGTTCTGCTTTTATGTGTATTGATTGTAGAGCGGTTAAGACTGAAAGCTTCACATCGTTTTTGAAACATGTAAAAAAACATCGAAAGTATTTACGGAACTACTGCTATTACTGCCATACTTCTATAGACAAAGGTGATACCTTAAGTGTTCATGTAAAAACCCACTTCACTAAACCACAATTGCCTTGTCCATTGTGTGGAGAGATACAAGAAAATGAAGACAGTCTTAAGCGTCATTTACAAGAGTACACCTTAACTAAACGCAAAAGAAGACCACGTAGGAAACCAGGAACACCAATTACCATTGAAGATTTGACATGTCCATTGTGCAAAAAGGTTTACAAGAATACAAACAGCTTACGGGACCACAGGAAACTACATACTGTAGATAGACAGCGGAATTATACCTGTGATAGATGCGGTAAAATGTTTTATAACAAAGGCACACTGACATCCCACATAATGGCCCATGATAATGTGCGACCTCATGTCTGCAGGATATGTAATAAGTCGTTTCTTTTTCCGAATGTTTTAAGAAGACACGTTGACATGCACTCTGGTGTAAAGCCGCATTCGTGTGATGAGTGCGGAAGATGTTTCCGTCTGCCTTACCAATTGAAGTCCCATATGATAATACATACCGATAATATGCCTTATGTATGTCAGTATTGTAATAAAGCGTTCCGTTTTAGGCAGATTTTAAAGAATCATGAACGTCAACATACTGGTGCGAAGCCTTACGCTTGTATACATTGTGGCATGGAATTTACTAATTGGTCGAATTTTAATAAGCATATGAAGAGAAGACATGGTACGGATGTGTCAAAAAAGAAAATAACTCCTGAAGGAGTGTTTCCGATAAACCCTCAGACAGGGCAGATCCTTCAAGTTGAAGATCCTGATCCTTTAGCGACAGTGGAATGGAGAAAGAAAATAATGTTGCCATCTAAAAGAGGAAAAAAGAAGACTATTAAGCAAGAAGTAGGTAGTTAA
Protein Sequence: MENVENTYCRFCAEPKGADKVLNLQDDEKKCEIHIKLAFLNALYVNVNSDDILPKTICFVCYDSLNKAYEFLEKVKKAQEVLTNLFALEQNRLFSAQEDDRGGFDDYLSDGAVDEAPESTVDVKIESPSKVSKSELNNLLNTEEIKSEPREENDSNILEVLSKETGTVDNNSIVHDMIIDAAINSTNFMLCAKDLAEISKRDIKTWTDYPWVCAFCNIEFIDIDMLRAHSKYAHGKCSAFMCIDCRAVKTESFTSFLKHVKKHRKYLRNYCYYCHTSIDKGDTLSVHVKTHFTKPQLPCPLCGEIQENEDSLKRHLQEYTLTKRKRRPRRKPGTPITIEDLTCPLCKKVYKNTNSLRDHRKLHTVDRQRNYTCDRCGKMFYNKGTLTSHIMAHDNVRPHVCRICNKSFLFPNVLRRHVDMHSGVKPHSCDECGRCFRLPYQLKSHMIIHTDNMPYVCQYCNKAFRFRQILKNHERQHTGAKPYACIHCGMEFTNWSNFNKHMKRRHGTDVSKKKITPEGVFPINPQTGQILQVEDPDPLATVEWRKKIMLPSKRGKKKTIKQEVGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00006548;
90% Identity: -
80% Identity: -