Nnit007506.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- zfpm1
- Assembly
- GCA_947347705.1
- Location
- OX374626.1:2413050-2423015[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.6 2.8e+02 3.1 0.3 2 23 6 27 5 27 0.95 2 13 0.29 32 6.1 1.5 1 23 1001 1024 1001 1024 0.90 3 13 6.2e-06 0.00068 20.8 1.5 2 23 1127 1148 1126 1148 0.97 4 13 0.00015 0.016 16.5 2.7 1 23 1154 1176 1154 1176 0.98 5 13 0.0071 0.78 11.2 2.5 2 23 1183 1204 1182 1205 0.95 6 13 1.2 1.3e+02 4.2 1.0 5 23 1218 1236 1217 1236 0.96 7 13 0.018 2 9.9 1.1 3 23 1243 1264 1242 1264 0.96 8 13 0.019 2.1 9.9 0.1 2 23 1283 1303 1282 1303 0.96 9 13 6.4e-05 0.0071 17.6 0.5 1 20 1309 1328 1309 1331 0.92 10 13 0.0006 0.066 14.6 0.1 1 23 1339 1361 1339 1361 0.98 11 13 0.005 0.55 11.7 7.2 1 23 1367 1389 1367 1389 0.98 12 13 5.8e-06 0.00064 20.9 1.3 1 23 1395 1419 1395 1419 0.98 13 13 0.00058 0.064 14.6 5.5 1 23 1425 1447 1425 1448 0.96
Sequence Information
- Coding Sequence
- ATGGATCAGCTTGTACAGTGTCCCGTGTGTACGCTCTACTTGCACAATGGTATGAGTTTGGAAACCCATTTAGATACACATCCCAAAGATCAGGTTATCAAAGCATTATGCAATCTTGCTAACAAAGGTGGCAGTAGTTATGGAAGTAGGACATCAACACCAATACATTCTGAAAGGTCATTCAGAAGTAGATCCCGTACTCCGGCTACTGAAGAAAGGTGGTCAAGTTCTCATCGCAGTGAAAATGATCGCTACTGGAGGAGAACACCTAGTAGAACATCTAAATCAAGCCAGCTACCCACTTCTCGAATTGGCACACCTGACACTAGAATGGGAGAAATTAATTTTGAGAATAATCTGGCCAACTCTACCCCATATTCTGGTACTCCATACTCTATTAAAATGGACAAAACCCAGCAAACATATTCCAATACTCCTATATTACCAGAATACGAACAACAGTATGTTTATCATCAAGATTCACAAGAGGATAGAGAGATCAAATATTCACGGAGTACAGAATATACTGGGATGGATGCCAACTGCAGTGTTTTCTCACATAATACGCCTTCACTTAACTCTGGTGTAAAGCTACAGACAACATTAGTGCCTGCTGTTACCAGGAGAGGGAGTGAAAATATGGTGAAAATGTTACCAAAGCCAAACAATATACTTGTGAAAACAAATGTAGGTGGGGTGCAGTATCTATCTCCAGGAGTGAAACCAATGCATGTCATGGTATCCACGGCACCAACATTTGTTCAGAAAAATGTACAAAATAACATGATTATGACTAGTAGTATACCTGGTACTCAAATTTTAGAACCTAAAACTTTGAACCCCTCTTTAACTACAAACCAGTTCAACCCAATGTCTAGTAGCACTTTTACCCCTAGTACAACTGTTGTACAAAATTCACAAATTATTTATAGAGAAATGGTTCATAATATTGATGGAAAACGGTTTATTTCATGTGTGCCTTCAGTCCTTAGTCATGAAAATGTAACTAATGTCTCCCAAGGGACTTCAATGTACCAAAATCTGATGGTGGTTGATCAGCTGGGTAATGCTTCTTGTATGTATACACCCCCTCAGTCCATCATATCCAAGCCATGTAATTCTTCAATATACAATGACACTATGTCACATATCCCAAGCAGCTCAACTGCTCACCTCGACAAAACCATACCTAACTCTCATGACCTGAATAAAACTCTTATCATAGAAGTAAGTCCTATGGGTCCGCCTGTTACTGATGTTACAATGACTAGTTCTATTACTACACAAACAGATGTAGATATTAGTAAGTCTAATAAATTGGATAAACTCTCTGTAGATAAATTTGAAAAGAGTGAGACACCAGGACCGAGCAAAGGACTAAAGATATTAAGTAATATTAAAGTGGAAGTTCCTGTACAACATCATAAAAATATGCTGAACACTGTAATGGATTTGACTGGTCCAAATGAGTCAGAGTATACAACACGGCCTATAACACCAGAGAAGATTCTGCCTGACCTAGATGATACTGATAATATTGATAATAATCAAATTGATGAGTGCACGCAGCCATCAATATCAAGCAGCGACAGCATAGTCTCACATACATTTTCAGTTATTAAAAATGTTGGTAATCCACCTTCATACAAAGATTCTAAATCAGGTATGTCAGATGGTAAGATTGACATTGAGTTTTCTGATAGCTGTCCTGTTCCTGATCTTATATGTAATGAAAAACCATCAATATCACCATGTAGTGAACTTTCTGAAAATGGAGAGAGCTCAATAGACCACACTTCAATTTCACCTAAACCACATAGTAGCTCTCAGAACAGCATTGAAAGCAATTTTGAAAAGAAAACAGAAGTTCAGCACCAGAAGCCATATAGGCACAACACATTGAGGTTAAATAATATTTTTGTGAAGAAACACAAGAAAGTCTTACAAATAAAGAATGCAAAGTCATTTCCAGCCAACACCAACTCAAGTCACATTGAAATAGAGCCTAGAGCTTCATCCTCTTGTAAATCTCCAGAAAAGTATTCCATCAATAAAATTCACAATTTGGAAAAGACTGAATGTAAACAAAAAACAAACAATTTAAATTCAATATCTGTTGAACAGATCAAGGAAAATAATGATAGTCATAATGATTTTGATGCTGATACTGAAGAGTTGTCTATGGATATTGAACCGGCAGTCCCATCAGTCATGAATGAGTCTGAATATACAATTGGAGTTAGTGTGGTACAAGTAAAAGAAGAGGCGAACACAAGTAATGAAGGAGGATTTAGTAATGAAAACAGTTTGTCCAATCGTGACATGTCCTCTGTCGAAACTTTGCGCCCAATTAATGTAATAACATATGGAAATATGGCACCAGGGGATTTTGAAGACGAGTCTAACCACAGAGAACTCTTGGAGCTGGAAGCTTCGTCTAAATCTAAACAGTTTGTTAGCATGATGAATGAGAATTATTTTGGGGACTATGCTGATTATTTTACACCCGACAGGGTGGAGGCGTTTGATTCTGAGAGAGATTCTGGGTTTTCTAAGGAAGGTCCAAAAGAAGGTATGTACTTTTGGGGTGAGTCTTCACATAAGGAAAGCGAATTTGTTTTACCAAACTTCATTCATGAAAGTTACAAAATTGCTGACAGCAGCGGAATTGACTACTCAGATATGGGTAACAGGGAATGTCAGGTGGACGTCGAAGGTGACAGGGACAGCAAAGCGGACGTGTTAAGCGAGAGCCGCAGTGAAGGCGAGCCTCCGCTGAACATCTGCGCCGACGAATGCATGCCGCCGCGTGGAGAGCTCAGCGGTCAGGAGAGTAATGGAGACATGGAGTCGCCTTGGAGTGGGATGTATCCCGATGTGCCCACATCACAACCTTACGATTTGATAGCCCGAGAAAGTTGGGAGTCAGATGGTTCGGAAATGGATCCCAATGATAAGAGGGATAATTTAGAAGATGAATTGTATCCTAAAGTGCGTGGGCACTGTTGTTCGTCGTGCGGCGGTAAGTTCGCGTCGGTGAAGGAGCTGCGCGCGCACAAGGCGCTCGTGCACGCCCCGAACCTCGCCGCCGCCAACACCTCGTACAGCCGGATGCTTACCACCAGGCATATCAAGAAGGAAGAAAAGCCTGAGATCGGGGACGCCGATAGGACCGCCATACCTGGTGATTCGAAGGAGTCTTTGACGTCAACCATGCTGCAAGTGTATGACGCGATGGCGGAAGCCAAGCCCAAGATTGAGAGTCTCATCAAGCAGGAACCCAAGCAGCGACGCCGGAGGGATTACGTCTGTCCTACTTGTAAGGTGGACCAACTGACGGAGGCGGCGTTCCACGCCCACCTCAAGATCCACCCGCTGGAGTGCCTCACGTGCGGCAAGTGCTTCTACCGGCGCGCCAACCTCGCGCTGCACATCAAGACGCATCTCGGCATCAAGAACTTTAAATGTGAGGTGTGCGAGAAGCGGTTCATCACGAAGCAGAAGCTGATGGAGCACCACAACGTGCACACGGGCCGCGCGCCCGTCAAGTGCACCGTCTGCGACGACACCTTCCGCCGGTACTCCAACATGGTGCAGCATAGGGACCGGCACCACTTCCACAAGAAGGCCAAGGTGCGCGACTACGTGTGCCAGTGCGGCGGGGTGTTCCACTCGCGCGCCAAGCTCCTGTGGCACCGCGAGACGCACGACGGCCGGCCCAAGGCGTGCCTCTACTGCTCCGACAAGTTCGTGCACGCCGCCTCGCTCACCAGGCACGTGCGACGAACGCACAGGGTCTACGGGCTGCCCGGCCTGGCTGACGCGCGGCCCAAGTCAGAGAACGTGCCCTGCCCTATCTGCAAGCAGATATACCTGCGCACAAACCTGCGCGCGCATTTGCTAACACACAGCGGCAAGCGACCCTACGTGTGCGTGGTTTGCAACAAGGCCTTCACCACAAAGTGGAACCTCAAGCTCCACCGCTGGACCCACATGTCCCGTTCCGCCAAGCCCTTCAAATGCACCCTCTGCAAGGGCGCCTTCATCAGGCAAGCGGAGTACATCGCCCATATGAACGCGCACAAGTCCGTCAAGCCGTACACTTGCAACTACTGCGGCTGCCAGTTCATCAGGAAGTACAACTGCCAGCGGCACGTGAGGGAACACGAGATGGCCAAGAAGTACGTGTGCAAGGTCCCCGAGTGCGGTAAGTCCTTCCATAGGAGCTACTACCTGTCCGAGCACATGAAAGTGCATAGCGGCGCGAGGCCGTTCTCCTGCAATATATGTGGTAAAACGTCCAGCAATAAATCGAATCATAACAAACATTTGAAGATACACCATGCGCGTGAGCCGGTCGCGACTGAAGCGTAA
- Protein Sequence
- MDQLVQCPVCTLYLHNGMSLETHLDTHPKDQVIKALCNLANKGGSSYGSRTSTPIHSERSFRSRSRTPATEERWSSSHRSENDRYWRRTPSRTSKSSQLPTSRIGTPDTRMGEINFENNLANSTPYSGTPYSIKMDKTQQTYSNTPILPEYEQQYVYHQDSQEDREIKYSRSTEYTGMDANCSVFSHNTPSLNSGVKLQTTLVPAVTRRGSENMVKMLPKPNNILVKTNVGGVQYLSPGVKPMHVMVSTAPTFVQKNVQNNMIMTSSIPGTQILEPKTLNPSLTTNQFNPMSSSTFTPSTTVVQNSQIIYREMVHNIDGKRFISCVPSVLSHENVTNVSQGTSMYQNLMVVDQLGNASCMYTPPQSIISKPCNSSIYNDTMSHIPSSSTAHLDKTIPNSHDLNKTLIIEVSPMGPPVTDVTMTSSITTQTDVDISKSNKLDKLSVDKFEKSETPGPSKGLKILSNIKVEVPVQHHKNMLNTVMDLTGPNESEYTTRPITPEKILPDLDDTDNIDNNQIDECTQPSISSSDSIVSHTFSVIKNVGNPPSYKDSKSGMSDGKIDIEFSDSCPVPDLICNEKPSISPCSELSENGESSIDHTSISPKPHSSSQNSIESNFEKKTEVQHQKPYRHNTLRLNNIFVKKHKKVLQIKNAKSFPANTNSSHIEIEPRASSSCKSPEKYSINKIHNLEKTECKQKTNNLNSISVEQIKENNDSHNDFDADTEELSMDIEPAVPSVMNESEYTIGVSVVQVKEEANTSNEGGFSNENSLSNRDMSSVETLRPINVITYGNMAPGDFEDESNHRELLELEASSKSKQFVSMMNENYFGDYADYFTPDRVEAFDSERDSGFSKEGPKEGMYFWGESSHKESEFVLPNFIHESYKIADSSGIDYSDMGNRECQVDVEGDRDSKADVLSESRSEGEPPLNICADECMPPRGELSGQESNGDMESPWSGMYPDVPTSQPYDLIARESWESDGSEMDPNDKRDNLEDELYPKVRGHCCSSCGGKFASVKELRAHKALVHAPNLAAANTSYSRMLTTRHIKKEEKPEIGDADRTAIPGDSKESLTSTMLQVYDAMAEAKPKIESLIKQEPKQRRRRDYVCPTCKVDQLTEAAFHAHLKIHPLECLTCGKCFYRRANLALHIKTHLGIKNFKCEVCEKRFITKQKLMEHHNVHTGRAPVKCTVCDDTFRRYSNMVQHRDRHHFHKKAKVRDYVCQCGGVFHSRAKLLWHRETHDGRPKACLYCSDKFVHAASLTRHVRRTHRVYGLPGLADARPKSENVPCPICKQIYLRTNLRAHLLTHSGKRPYVCVVCNKAFTTKWNLKLHRWTHMSRSAKPFKCTLCKGAFIRQAEYIAHMNAHKSVKPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHLKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00006534;
- 90% Identity
- iTF_00006534;
- 80% Identity
- -