Nnit031931.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374643.1:1430086-1433784[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.1 2.3e+02 3.4 0.2 1 21 306 326 306 327 0.91 2 19 5.9e-06 0.00065 20.9 3.1 1 23 341 363 341 363 0.99 3 19 6.6 7.2e+02 1.9 0.1 2 23 367 388 366 388 0.88 4 19 0.16 17 7.0 2.1 3 23 395 416 393 416 0.94 5 19 0.071 7.8 8.0 0.2 2 23 471 493 470 493 0.96 6 19 0.027 3 9.4 5.1 1 23 499 522 499 522 0.96 7 19 0.0058 0.64 11.5 1.0 1 21 526 546 526 547 0.92 8 19 0.0049 0.54 11.7 1.3 1 23 555 578 555 578 0.95 9 19 0.27 30 6.2 1.6 1 23 583 606 583 606 0.94 10 19 0.0037 0.41 12.1 0.1 3 23 620 640 618 640 0.96 11 19 0.00051 0.056 14.8 0.6 1 23 646 668 646 668 0.98 12 19 5.4 5.9e+02 2.1 0.1 2 12 674 684 673 686 0.87 13 19 2.1e-05 0.0023 19.1 2.0 1 23 704 726 704 726 0.98 14 19 0.027 3 9.4 0.1 2 23 731 752 730 752 0.95 15 19 0.00022 0.024 15.9 0.4 2 23 771 793 770 793 0.96 16 19 0.00014 0.016 16.5 1.2 1 23 799 821 799 821 0.99 17 19 0.00093 0.1 14.0 6.2 2 23 828 849 827 849 0.96 18 19 0.067 7.4 8.1 1.0 1 23 855 878 855 878 0.88 19 19 3.7 4.1e+02 2.6 0.5 3 23 885 906 884 906 0.95
Sequence Information
- Coding Sequence
- ATGGGTGAAGAAGTCACTACACTTGAAAACAATAGCCAACAATTAAAACAAAAAATAAACAATTTATTTAGGGCTCCCAGATTTTGTGGTATTTGTTTAGATTGTGAAGAAAAACTATGGGCAGTTGACACAGAATTTGATATTGCTGTTGGACAACAGACACATAAAAAATTACTAAAAGATATCATTGATTATATCTTGAATGATGAGGGTCATGAAATACTTGCCAGTCTTCATCTGTGCAGTCAATGCACAGAGAAATCAATTCAATCATATCTCTTCATTTACAATGCAAAACAATTGTTTAAAATAATATACAGATGTGTAAATGAAGTTTATTCTAAAACTGTGGATGTTTCCGATAAATTGAAACTTTCAGGCAGTGATTATAGCAATTCTAACATGGTTATTGTACTAGAACAAGATTCTGAAATGTGCCAATATACAGATATAGGTAAAATGACTGAAATTATAGCTAAAGAAACACCAAAGCCATTTGCTAAAGTAGAAACTGAATCTGATATAAATGAAAAAGTATATTTAGGATTTAATGAAGATAATAATATAGTAACTGACACTGAGATTACTAAATCAGTAATTGTTGAAACTATTGAATCATTTTATGATGAGGATTTGAGACAGAAAGCAAATGGACAAAATGGAGTCGAAAGTAATATATTCCAGACAGAAGGATATAAAAAAGTTGAGTCTGTTAAAATAGAAGAAATAAACTTACAACTGATTGATTCAGAAATCCTTCCAGATGTTGATGGTGACAACAAAATTCAAATTATTGATATTAAAGATGAAACATGTGAAGAAGAATATTTAATCCACATAGATGATAATAAATCAGAAACAGAAGACCTTGAAAGTCCAAAGAAAAGGAAAAAGAATTCAATACCAACACTTACATATAAATGTAATAGGTGTAGAGAAATACTACCATCCTATAAGGGGTGGAAAGAACATGTTAAAATGTGTCGAAAATTAAAAGAATCAAAAGACGTCAAGCATATCTTTAAATGCAAAATTTGCACTGAAACATTTATAACTCAGAGATCATTAAATACACATTACAAAACACATTCTAAAATACGATGCAAGGTTTGTCAATTTATTGTACCTCAGGAAGATTTGGCAGAACATCTGAAGTTAAACCATGAAGATTATATACACTTGTGTAAACTCTGCAAATTTTTCTCTTTCAATGCTGATGGTTTACAAATCCACATGATGAAAAATCACACTGGTTCCAAATGTGCCTTATGCTATAAGAAAGTCAATGAATCCGAGTTGAAATTTCATAAATGCAGATTTAGCTGTTTGGAATGTAATGACAATGTTTGTATACATTATAAATATTTAATCTCTTATAGAGAACAAGTCCTAAATAATATTACTAAAATCAAATGCGCCGATTGTGATTATATCTGCCCAAAGAGGGAGGCTTTGCTTGGACACGTTAACAGGGAACATTTAGATCATCATCCATTTACTTGTGCTCACTGTTCCCAACAATTTTACTCTAGAACTACTTTAAGGTACCATTTAAACCAGTTCCACAGAGATCGTCATATTTGTGAGTTTTGTGATCAAGAATTCAGTACTAAGTTGACATTGAACAATCATAAAGAAACATGTGGAAATATTGAAAGACAGCATAGATGCGAGCAATGCTCGAGTTCTTTTAATACTCTAGAAGAATTGGCAAACCATGTTAAACTGAGGCATGGTGACGAAACCTACAATTGCAATTTGTGCAAAAGAAAATTTTTACTAAGCATTAAACTACAAGAGCATATGTTTAAAGTTCATAATGGTTTGCAAATGAAAAGGAAGAAAAGTATTTTGGATTGCCCTATATGTGAAATTAAACTTAATACTAAGAAAAAACTCATGCAGCATATCGAAGTTCATGGAGCTGATGCCAGATTCCCTTGTAAAGACTGCAATGCGGACTTTGACAGCATTAAAAAGTTGCATGCTCATATTAGAATACATTATGATGATGTGATCCAATGCCTGGATTGCAATAAAGTTTTAACAACTACATTTTTCCCACACCACATGGTGTACTGCAAAACAGGCAGAGAAGAAAACGAAGTGTACACATGCGAAACATGTGGAAAAACGTATAACTCTGAAACGCAATTAAAATTACATCGTAAAAATCATTTAGAGAAAATACCTTGCCCTGTATGTAAAAAACCAACGAAACCGGTTTATTTGAAAAACCATATCAAATACATGCATACTAAACCAAAGAAACCAAAAAAGGTGGCTAAGGGGAAAACTAAATACTATTTGAAATGTGATTTGTGTGATCATATGGTATCACGGCAAGGGGAGTTGGAGGCTCATATAAATAGATTCCATTTAAAAGTAAAGCCTTATCAATGCAGTTATTGCCAGAAAGCTTTCTTTGGAAAAGAGAGATTAAGAGATCATCTTATAACTCACACGACTACTAAAACTTGCTTTTGCAGCATCTGCAATCAGAAGTTTGAGAACAATGCCTGTTTAAAACTACACATGAGAAGGCACACGGGTTACACGCCGTATACTTGCGAGATTTGCGGCGATAGATTTAGAACATCGAGTATAATGAACACTCACAAAGTGAAAAAACATTCCGAAAGAACGGTGGCTTGTCCGCTCTGTGAATCCATGTTTTACTTAACAAGAGAAATGAGAAGCCATTTTAAAAAAGTCCATTGGAAACAGAAAGGCAAGAAATTTGATCCGAGAGACGTAAAAGAATTACGACCAGAATATTACCATTTGTTTGAAGATGGCAGATTGCCTAAGGTTGAGGGAGAAGGATTGTATATATCGTCAAAATTCAATGAGAAATTTGCCTGA
- Protein Sequence
- MGEEVTTLENNSQQLKQKINNLFRAPRFCGICLDCEEKLWAVDTEFDIAVGQQTHKKLLKDIIDYILNDEGHEILASLHLCSQCTEKSIQSYLFIYNAKQLFKIIYRCVNEVYSKTVDVSDKLKLSGSDYSNSNMVIVLEQDSEMCQYTDIGKMTEIIAKETPKPFAKVETESDINEKVYLGFNEDNNIVTDTEITKSVIVETIESFYDEDLRQKANGQNGVESNIFQTEGYKKVESVKIEEINLQLIDSEILPDVDGDNKIQIIDIKDETCEEEYLIHIDDNKSETEDLESPKKRKKNSIPTLTYKCNRCREILPSYKGWKEHVKMCRKLKESKDVKHIFKCKICTETFITQRSLNTHYKTHSKIRCKVCQFIVPQEDLAEHLKLNHEDYIHLCKLCKFFSFNADGLQIHMMKNHTGSKCALCYKKVNESELKFHKCRFSCLECNDNVCIHYKYLISYREQVLNNITKIKCADCDYICPKREALLGHVNREHLDHHPFTCAHCSQQFYSRTTLRYHLNQFHRDRHICEFCDQEFSTKLTLNNHKETCGNIERQHRCEQCSSSFNTLEELANHVKLRHGDETYNCNLCKRKFLLSIKLQEHMFKVHNGLQMKRKKSILDCPICEIKLNTKKKLMQHIEVHGADARFPCKDCNADFDSIKKLHAHIRIHYDDVIQCLDCNKVLTTTFFPHHMVYCKTGREENEVYTCETCGKTYNSETQLKLHRKNHLEKIPCPVCKKPTKPVYLKNHIKYMHTKPKKPKKVAKGKTKYYLKCDLCDHMVSRQGELEAHINRFHLKVKPYQCSYCQKAFFGKERLRDHLITHTTTKTCFCSICNQKFENNACLKLHMRRHTGYTPYTCEICGDRFRTSSIMNTHKVKKHSERTVACPLCESMFYLTREMRSHFKKVHWKQKGKKFDPRDVKELRPEYYHLFEDGRLPKVEGEGLYISSKFNEKFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -