Nnit032587.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374644.1:1242085-1252500[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.018 2 9.9 0.3 2 22 106 126 105 126 0.95 2 19 1.5 1.7e+02 3.9 0.7 3 23 132 151 130 151 0.93 3 19 0.0069 0.76 11.2 2.2 1 22 156 177 156 177 0.96 4 19 0.04 4.4 8.8 0.1 1 23 185 208 185 208 0.90 5 19 0.014 1.5 10.3 2.4 3 21 213 231 211 232 0.93 6 19 0.027 2.9 9.4 3.9 1 23 243 266 243 266 0.95 7 19 0.0014 0.15 13.5 3.5 1 23 272 294 272 294 0.93 8 19 0.0033 0.36 12.2 5.4 1 23 301 323 301 323 0.98 9 19 0.00011 0.012 16.8 0.1 2 22 390 410 389 410 0.95 10 19 1.4 1.5e+02 4.0 0.5 3 23 416 436 415 436 0.93 11 19 0.0067 0.73 11.3 1.9 1 23 441 464 441 464 0.97 12 19 0.00012 0.013 16.8 0.2 1 23 469 491 469 491 0.98 13 19 0.54 60 5.3 2.8 1 21 494 514 494 515 0.93 14 19 0.00013 0.014 16.7 1.1 1 23 528 551 528 551 0.95 15 19 6.7e-05 0.0073 17.6 1.1 1 23 557 579 557 579 0.98 16 19 3.1 3.4e+02 2.9 1.5 5 23 589 607 586 607 0.95 17 19 1 1.1e+02 4.4 0.6 1 23 613 636 613 636 0.89 18 19 0.043 4.7 8.7 0.7 3 19 646 662 645 664 0.98 19 19 0.047 5.2 8.6 2.2 2 13 770 781 769 783 0.86
Sequence Information
- Coding Sequence
- GTGGAGCTATCTTCCCCGCTGCCCAGGATGGTCTGCTCCCCGTGCGTTGCCTCAGCGATGGTATCAGCACCGTTCATCCAAATGTGTCGGGCTGCCGATGAAAAATGGAGAGAATTCTCCGATTGCCTTGCAAACTTTAGTGAAAATGTCTCTAGTAACTCCAAAAGCGCATGTATATTCATCCAAAATAAAGAACAGACAACTTTAGAGTCTACAACTCGTGCGAACACCTCCTCTGAGGCGCTTCAGTTAGTCAAAAAGTACCTGAGACATAGTACAGGACGTAAACGTATTGAGAAAGTTTATACTGATCTAAAATGCCCGGAATGTTTGAAAGCGTACCCCACCATCCATTTGTTTAACCTTCATTTAAGAAAAATCAACAAAATAATATGCTATTATTGCAAACAGATATTTGACTTCGAGTCATTCCCCAAACATATCAAGAGGCATGGCAGGATAGTGTTTACCTGTAAAGTTTGCAAAAATTTCTTTAAGGTTGAACATAACTACTTAAGACATCTAAGGGTGTGTAAGAAAAAAAAAGGGTCCCATGTTTGCGTGGAATGCTCGCAAAGTTTTATCTCGGAATCAAAAATGGTCATACATTACGCAGCGATACACAATCCTAAGATGTGCTTTGTTTGCAACAAAAAATTCATAAGTAAAGTGTGTTTTAGAAATCACTTGCAAATCTGTGGTGAATCCAAAGCTGGCGGCTCGAAGTTCATTTGCGACCATTGCTCGAAAGTGTACAATTGTAAAAGCGGTCTTCGATTACATATTCAGCTCAAGCATTTAATGGAGTTCATGTATCAGTGTGAGCGGTGCGGCAAGAAGTTCAGTAATGCATGTTTTTTGCGGGAACACGACAATACCCACAACAGGGTGGAGGATAGATTCGTGTGTTGTATTTGTTCAACAAAATTCAGTTCACGGAGAGGCTATGAACGCCACTACAAGAAACATTTTGACAAAAACGGTTTACCAACTGATTATAAATTCAGAAAGAAAATAAATAGAAAACCAGAATTGATTGAATGCTTTACATGCAATCAGGCAGAGAGAGCTACCAAAAATGGATTCGAAGACGAAGTAAAGGAAGAGCAGCCTTTGTTGATGCAAAAGCCCACAGTCAAGAGGATACCTCGGTCAGTGCGTTCATGGCAATGCCCCGATTGTGGCAAGAAATATGCTGTTCCACTCCACTTAAACTCCCATTTAAAAACCACAGCAAAGGTAGCTTGTAGTTTGTGCGGTTTAGTTCTTACCAAAAAGAAATTCGCCCAGCATTTAGAAAAAAATCACGGAAAAATTTTGTTTTCTTGTGAAAGTTGCCACCAATTGTTTGATGATCAAGTCTCCTTAAACTCGCACGTGAAAAAGTCGCACGACCGCGATTCCTACCAGTGCAAAGTTTGCGGGAACGGGTATACGAATGAAAGGGCTCTGAGCGCTCACATGTACTCGCACACACTTTTCTACTGTAGCCCTTGTGGCCAAAGCTTCGAGAACAGGAAATGCTACGTGTACCACCAAAAGCAGTGTAAAGTTGATATACCGACGCCCACTTCTAGCGAATATGTTTGCGATCATTGTGGTAACTCGTATACTAAGAAGCCATCACTCCGTATACATATAATACAGAAACACCTACACGTGTTACCTTACGTTTGCGACACTTGCGGGAAAAGAACGTCAACAATAGCTCACTTGAGGTCTCACGAGAAAGTGCATACCATTGAAAGGAAAACGTTCCAGTGTCATTGTGGGGCAAAATTACGTACAGAATTAGGTTTTCAGCTGCATCAACGTATTCATACCGGTGAGAGACCCTACGAGTGTGAGGAATGCGGCGACAAGTTCCTATCTTCGTCGCGGAGGTTGGATCATATTAAACGAAGACATAGGAGTACTAAAGACATGCCGCACGGATGCACTATGTGTTCCGCGCGCTTCGTCCGACCATTCGAACTGAAAAAGCACTGTATGTCTAAGAAGAAAATCTGTCCAAAAGGTCTGTGCGTGCTTTGCACATCAGCTGCGCTAGCCGCACAAGAGTTCCGTGTATTCGTACGTACTTCGCAGAACTCCTGGAAAAAAGCCATCAGCGCGATCAATGAAATACCAAAATCGTATAAAAAATCCGTCAAATCACTTTCTTCGTTTATAAAATCGAGATTTACGATCAAAGATTACGTTGGTGGGGACTCTAAAACAATACTGAACAGGTTAAAACTGCGCTTGCTCAGGAATAACGTTGTAGAAGAAAGGAAACCGAGGATTGCCAGAGCTGGCCCGCCTTGTAGTTGCCCGGATTGCGGCAAATCTTTCTACAGCCCTTTTTTATCTTCGAAGCCATTTAAAAAATAG
- Protein Sequence
- VELSSPLPRMVCSPCVASAMVSAPFIQMCRAADEKWREFSDCLANFSENVSSNSKSACIFIQNKEQTTLESTTRANTSSEALQLVKKYLRHSTGRKRIEKVYTDLKCPECLKAYPTIHLFNLHLRKINKIICYYCKQIFDFESFPKHIKRHGRIVFTCKVCKNFFKVEHNYLRHLRVCKKKKGSHVCVECSQSFISESKMVIHYAAIHNPKMCFVCNKKFISKVCFRNHLQICGESKAGGSKFICDHCSKVYNCKSGLRLHIQLKHLMEFMYQCERCGKKFSNACFLREHDNTHNRVEDRFVCCICSTKFSSRRGYERHYKKHFDKNGLPTDYKFRKKINRKPELIECFTCNQAERATKNGFEDEVKEEQPLLMQKPTVKRIPRSVRSWQCPDCGKKYAVPLHLNSHLKTTAKVACSLCGLVLTKKKFAQHLEKNHGKILFSCESCHQLFDDQVSLNSHVKKSHDRDSYQCKVCGNGYTNERALSAHMYSHTLFYCSPCGQSFENRKCYVYHQKQCKVDIPTPTSSEYVCDHCGNSYTKKPSLRIHIIQKHLHVLPYVCDTCGKRTSTIAHLRSHEKVHTIERKTFQCHCGAKLRTELGFQLHQRIHTGERPYECEECGDKFLSSSRRLDHIKRRHRSTKDMPHGCTMCSARFVRPFELKKHCMSKKKICPKGLCVLCTSAALAAQEFRVFVRTSQNSWKKAISAINEIPKSYKKSVKSLSSFIKSRFTIKDYVGGDSKTILNRLKLRLLRNNVVEERKPRIARAGPPCSCPDCGKSFYSPFLSSKPFKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -