Nnit033217.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374644.1:9759074-9763126[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.3e-05 0.0091 17.3 0.9 2 23 63 84 62 84 0.97 2 10 3.4e-05 0.0037 18.5 0.4 1 23 88 110 88 110 0.98 3 10 0.027 3 9.4 5.0 1 23 117 139 117 139 0.95 4 10 0.00083 0.091 14.1 3.6 1 23 173 195 173 195 0.97 5 10 0.0021 0.23 12.9 0.3 2 23 201 222 200 222 0.96 6 10 2.7e-05 0.0029 18.8 0.7 1 23 228 250 228 250 0.99 7 10 3e-05 0.0033 18.7 1.6 1 23 256 278 256 278 0.98 8 10 5.5e-06 0.00061 21.0 1.9 1 23 284 306 284 306 0.98 9 10 0.00025 0.027 15.8 1.0 2 23 313 335 312 335 0.93 10 10 0.0037 0.41 12.1 2.2 1 22 341 362 341 365 0.90
Sequence Information
- Coding Sequence
- ATGGAGAATGACACTGATCAACAAGAAAATGTTGAACATATAGAAAAAACAGTAAAACTCAAGGAAGAAAAAGAATTTGATGCATGCAGTGAAAGTTCAAGTTTACCTAAGAAATCTAGATTAAGAAGGAAAGTAATCACGAAATACATAGAAAGTGATGACGAAAATGAACCTGCTCCAAATTTGAAGTGTCCGAAGTGTAAAAAACAGTTTTATTCAAAGACTGGCGTTCTCAACCACATGTTGATCCATGGCCGCAAATACACTTGCGCTCTCTGCGAAATAGTTTTCAACACAAACACAGAGTTGAGGAAGCATAAATTGGTCCACAAAGACGAAGACAGGGTATTTTTATGCCACACGTGCGAAGAAGCATTTTCAAATCACTGCGATTATTTAATACATCAGGTAACACATCAGAAGCCTTGGCATTCGCATAAGTGTGTTGAGTGCGGGGTGCACAAAACACCAAAGGATATCAATATGCATATAAAATCCCACTTTAATGAATATGACCATGAATGTGCAGTGTGTAAGAAGAAATTCCAATCGAAATCCAGTCGGAATGAACATATGAAACTTCACCAAACTGGCACCATAGAGTGTGTAGAGTGCGGGAAGCTGTTAAAAAACAACAAGCAATACCTGAGTCATATGGACAGCCACATTGGCTTAAAAAAGTTCCAATGTCTCTACTGCGGTCAGGGATTTTATCACCCTAGTGCGGTGACTGTACACGCAAGAAAACACACGCTCAATATGCCATTCCGATGCGACATCTGTAGCAGGGCGTTCTACCAACAGACGGACTGGAAAAGGCATAAAGACACACACGATAGAACAAAGAAATACAAATGCGATATGTGTGATAAAGAGTTTCGTCTCCAAAAGTCATTGCAAGACCATTTGAAGTATCATACTAAAACAGATTTGTTATATTGCCCGGTGTGCAACAAACCTTGTCAAAACAGTTCTACCTTGCGAGTCCACACGCTGTATGTCCACACGGATAAGAAGAATTACAAGTGTGATTTTTGTAATATGGCGTTCAAAATGAAAGCTAAACTGGACAGACATAATAAGTCAAAGACCCACCAACGAGCTCTGTTTGAAGTGGGAGAGAATTGA
- Protein Sequence
- MENDTDQQENVEHIEKTVKLKEEKEFDACSESSSLPKKSRLRRKVITKYIESDDENEPAPNLKCPKCKKQFYSKTGVLNHMLIHGRKYTCALCEIVFNTNTELRKHKLVHKDEDRVFLCHTCEEAFSNHCDYLIHQVTHQKPWHSHKCVECGVHKTPKDINMHIKSHFNEYDHECAVCKKKFQSKSSRNEHMKLHQTGTIECVECGKLLKNNKQYLSHMDSHIGLKKFQCLYCGQGFYHPSAVTVHARKHTLNMPFRCDICSRAFYQQTDWKRHKDTHDRTKKYKCDMCDKEFRLQKSLQDHLKYHTKTDLLYCPVCNKPCQNSSTLRVHTLYVHTDKKNYKCDFCNMAFKMKAKLDRHNKSKTHQRALFEVGEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -