Nnit032960.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374644.1:6274200-6306419[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00066 0.073 14.4 2.3 1 23 219 242 219 242 0.92 2 23 0.0006 0.066 14.6 0.2 2 23 268 290 267 290 0.94 3 23 0.17 18 6.9 4.1 3 23 315 335 314 335 0.97 4 23 0.02 2.2 9.8 1.1 1 23 441 464 441 464 0.97 5 23 0.085 9.4 7.8 0.5 2 23 491 513 490 513 0.95 6 23 0.0004 0.044 15.1 0.7 1 23 561 583 561 583 0.95 7 23 0.33 36 6.0 0.4 1 19 588 606 588 608 0.78 8 23 6.4 7.1e+02 1.9 0.4 2 23 619 641 618 641 0.90 9 23 0.0045 0.49 11.8 3.2 2 23 649 671 648 671 0.96 10 23 0.0004 0.044 15.1 3.7 1 23 677 699 677 699 0.97 11 23 4.2e-05 0.0046 18.2 2.5 1 23 705 727 705 727 0.99 12 23 0.00081 0.089 14.2 6.0 1 23 733 756 733 756 0.97 13 23 5 5.5e+02 2.2 2.4 1 11 764 774 764 778 0.83 14 23 0.61 67 5.1 0.4 1 23 824 847 824 847 0.89 15 23 0.15 16 7.0 0.1 2 23 874 896 873 896 0.93 16 23 0.0078 0.85 11.1 0.3 2 23 919 940 918 940 0.97 17 23 0.055 6 8.4 0.1 1 23 944 966 944 966 0.93 18 23 0.52 57 5.3 4.3 1 20 971 990 971 992 0.92 19 23 0.58 64 5.2 0.6 2 21 1002 1021 1001 1024 0.78 20 23 0.00012 0.013 16.8 0.8 2 23 1032 1054 1031 1054 0.96 21 23 0.0025 0.28 12.6 4.1 1 23 1060 1082 1060 1082 0.97 22 23 2.8e-05 0.0031 18.8 0.7 1 23 1088 1110 1088 1110 0.99 23 23 0.00011 0.012 16.9 5.2 1 23 1116 1139 1116 1139 0.98
Sequence Information
- Coding Sequence
- ATGGAAAGACTAATGAACAATGGCATATGCCGGTGTTGTTCTTCCGAAGGAACATTCAAAGACATCTCATCGAAGCACCAATGGATGGGCGAAGAAGAAATCTACGCCGACATGCTTCGCGAATGTTTCGATATTAATTTGTCAACAAACGATAATGGCGTGGACAGTGGCATCTGTGAAGTGTGCATCACTCAGCTCCGCAACGCTTCCAATTTCAAGAAACAGGTGCTGCACACTGAAGAGCAGTTTAAGAAAGGCTTCCCTGATAGGCTGTTCAAAAATAGCATAGTGAAAGTGGAAGTTGGCCCCATAGACTATGAAGGCAATATCTCTGAAGAAAACCATCTCTCTGATGACTACTCTGGTGGAGAGTACGAGGTCCCCATAAAGTCTGAAGTGGAGGAGAGCAAAGGCAAGAAGCGAGGCAAGGCGACCACGTCTCGTGCCAAGAAACCGAAACTGGAAGATGGGGAGACATCTAAAAGTAAAACCGGTGCAAAATTACGGGAAAGGGCTAAAAAAGTCGACGAAGACGTGGAACTGGTAGATAACGGTGAGAAATTCATGTCCGAGATGAAGAAGCAGTTGCATAACCTGAACACGGTGCTCAGGTATTCCAACGCGACCCCGTTCAAGGACCGCAACGACGCGGGCTACGTTTGCGCCTACTGCTACAAAACGTTCCCGGATCCGCACCTCCTGAGGAGTCACACGCATGACGACCATAGCAAAGAGAAAACGTCATATAAAGGCACGTGTGGAATTGCAACATTCATCGCCCTTTTAGATATAGTCGATCTCAAATGCACCGTATGCGATCAGCCCTTCGAAACCCTCGACCTCCTCAGGGAACACTTGTTCAAAGAACACAGCAAGTCATACTACTTCGGCTTGACAGACTACGTGCAGCCGTTCAAACTGACCAATGAGCAGCAAGTCGCCTGCTGCCTCTGCGACCaaatgttccacaacatgaaactcctgatgatgcacatgaataaccacttcagaaactttatttgctctgtctgcggcgctggGAAACCTACTAGATTAGGCGCAATTCCGCTCAATCGTGAAAGCATTAGAGAACACAAGGAATATAATCATGGTGACGATTGGAAATTGACTATTAAAAAGATAGTAGAAAAGAAGCGAGTAAATCGTTCAAGTTCAAATTCTAATAATTTAAATAATGCTGTGGATTTGCCTGACGGTCCGTGTCTACGTAGATTGGAGTTATCAAAGCACCATCATAATATTAAACTGATACTGCTACATACAAACGCGACCCCGTTAAAAGACTACTAcggtatcggatactcatgcgtcttctgtaccgaccattttacagatcctgcagaactcaagatacatactttgactaaacatacggaaccagagttcggcaagttcttacgaagtgagtcctggtattcgtacgtagccaaaatcgacatcacgtctttgcagtgttctatttgtgaagaacatgtggagaatttggaaaaactaatccaacaccttaccagtcgccacgataaaatatggcactttgatataaagaaccgtatacttgcattccggtttgaaggcgacactgtattttgttcggtttgcttcatgacctcgcatcacttcaaaatagtgttggaacatatgaacatgcactacggcaacttcttatgcgatgtctgtaacgcatcattcataacttcgcgtactttaaaaggtcaccgtaggagccataaaaccggagaattcgcttgcagcgtttgctccaaggtctttaatacggagctgaagaaaaagatgcatgaaagatgtgttcacaaaggtgaagataaaaggagcaagtgtccgttttgcatcgagagattcgtgagttataccaagaaaaggattcacatggtcgaggttcatggggcgccaccactcgttctgaaatgtaccgcttgtgacaaaattttctcatgtaaggcaaaactgagaaaacacatgaacagggatcatttactagaaagacgccatgagtgcaaatattgtgatatgaaattcttcgacagccgtactttgaaggaacatatggttaaacataccggaataaaaaaatacacttgtgaagtgtgctccaagtcgtatggacgaaaatgcacactccgggaacatatacgtatacacgtggacgacaggcgatttaaatgcagccactgtggccaggccttcgtccagaagtgtagttataaaagtcatttactctccaagcacggacacgtcgacgacaggcgattcaagtgcaactattgtgGTATCCGTACCAACAAATGTGAGTCCAAACCCCGACCTGTGCAAAGCACTCGACATAAATTGGAGTTCAGAGTGCCTGAAATAAGCAAACACCGCGCAAATGTGAGAATGATACTGCAGTgctccaatgctacgccgatcagatgccacggcggcatcggctatgcttgctgcttttgcgcagaacagtacccagatccggcggatctcaaaacgcacaatttggaatcccatgatgataaatctaaagtcaaatttatgaaggacaaatgcctctcttctttcatagtgaaattagatattacagcattgagttgcacaatctgttctaaagctatggacacggtagatgaacttacgcaacatctagttaaagatcacggcaaaataatatacacggatgtcaagagccacattgttccgttcaaattctttgacaaaacactgcgctgtgtggtctgctcaataatttttaacaaattcaaagcattgctggaacatatgaatacacattttagaaattacgtatgtgatgtttgtgacgctgggtatgtgactcggtgcatgctagcaaaccacagtgaagcccataagactggaaaattcaaatgtcgttattgcgagaaagtatacgatacgcaaagaaaacggaggtctcacgagaaatgtgtgcacatttacatgaacatgttaaacaaatgcggctactgtaacgagaagtttaaagactacaggataaaagagaagcatattgcccaagtgcacgggattgcgagtatcgacctgaaatgtcaggcttgcgataagtcgtttccaagtcaaagagctctgaacacccacacgaagagggatcacttgttggagcgccgacacaagtgtgatcattgtgatatgaagttttacaatgggaacgagttgaaaaatcacatagttaagcatactggggtgaaactgtttcagtgcagtgtttgcctaaagtcgtacggtcggaagaaaacgctggcggagcatatgaggatacacgcggatgataggagattcaaatgcgagcattgcgggcagtcttttgtccagaaatgcagttggagaggccatatgcgctcgaaacatggggaagtggtataA
- Protein Sequence
- MERLMNNGICRCCSSEGTFKDISSKHQWMGEEEIYADMLRECFDINLSTNDNGVDSGICEVCITQLRNASNFKKQVLHTEEQFKKGFPDRLFKNSIVKVEVGPIDYEGNISEENHLSDDYSGGEYEVPIKSEVEESKGKKRGKATTSRAKKPKLEDGETSKSKTGAKLRERAKKVDEDVELVDNGEKFMSEMKKQLHNLNTVLRYSNATPFKDRNDAGYVCAYCYKTFPDPHLLRSHTHDDHSKEKTSYKGTCGIATFIALLDIVDLKCTVCDQPFETLDLLREHLFKEHSKSYYFGLTDYVQPFKLTNEQQVACCLCDQMFHNMKLLMMHMNNHFRNFICSVCGAGKPTRLGAIPLNRESIREHKEYNHGDDWKLTIKKIVEKKRVNRSSSNSNNLNNAVDLPDGPCLRRLELSKHHHNIKLILLHTNATPLKDYYGIGYSCVFCTDHFTDPAELKIHTLTKHTEPEFGKFLRSESWYSYVAKIDITSLQCSICEEHVENLEKLIQHLTSRHDKIWHFDIKNRILAFRFEGDTVFCSVCFMTSHHFKIVLEHMNMHYGNFLCDVCNASFITSRTLKGHRRSHKTGEFACSVCSKVFNTELKKKMHERCVHKGEDKRSKCPFCIERFVSYTKKRIHMVEVHGAPPLVLKCTACDKIFSCKAKLRKHMNRDHLLERRHECKYCDMKFFDSRTLKEHMVKHTGIKKYTCEVCSKSYGRKCTLREHIRIHVDDRRFKCSHCGQAFVQKCSYKSHLLSKHGHVDDRRFKCNYCGIRTNKCESKPRPVQSTRHKLEFRVPEISKHRANVRMILQCSNATPIRCHGGIGYACCFCAEQYPDPADLKTHNLESHDDKSKVKFMKDKCLSSFIVKLDITALSCTICSKAMDTVDELTQHLVKDHGKIIYTDVKSHIVPFKFFDKTLRCVVCSIIFNKFKALLEHMNTHFRNYVCDVCDAGYVTRCMLANHSEAHKTGKFKCRYCEKVYDTQRKRRSHEKCVHIYMNMLNKCGYCNEKFKDYRIKEKHIAQVHGIASIDLKCQACDKSFPSQRALNTHTKRDHLLERRHKCDHCDMKFYNGNELKNHIVKHTGVKLFQCSVCLKSYGRKKTLAEHMRIHADDRRFKCEHCGQSFVQKCSWRGHMRSKHGEVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -