Nnit032949.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374644.1:6163788-6169442[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.019 2.1 9.8 0.8 1 23 24 46 24 46 0.96 2 17 0.00063 0.069 14.5 0.2 2 23 72 94 71 94 0.95 3 17 0.52 57 5.3 2.9 3 23 118 139 116 139 0.91 4 17 0.00012 0.013 16.7 1.8 3 23 147 168 146 168 0.97 5 17 0.082 9 7.9 0.2 2 23 174 196 173 196 0.96 6 17 0.12 13 7.3 5.7 1 23 200 223 200 223 0.98 7 17 6.1e-05 0.0067 17.7 3.0 2 23 230 252 229 252 0.96 8 17 0.011 1.2 10.6 0.3 2 23 259 280 259 280 0.96 9 17 2.8e-05 0.003 18.8 2.2 1 23 286 309 286 309 0.95 10 17 0.0048 0.53 11.7 4.9 1 23 427 449 427 449 0.98 11 17 0.25 27 6.3 1.0 3 23 477 498 477 498 0.93 12 17 0.0022 0.24 12.8 3.1 2 23 521 543 520 543 0.95 13 17 0.31 34 6.0 0.0 1 23 552 575 552 575 0.89 14 17 0.0074 0.82 11.1 0.5 2 23 579 601 578 601 0.92 15 17 0.014 1.5 10.3 0.1 2 23 607 629 606 629 0.93 16 17 0.0012 0.13 13.7 2.5 3 23 638 659 636 659 0.95 17 17 0.00065 0.072 14.5 0.2 2 23 665 686 664 686 0.96
Sequence Information
- Coding Sequence
- ATGAGACGGAACGTGTTTGAGGTGCTCGTTAGATCTACTCTGATGCCTTTCAGATGGCTCAAAAGTTCCTACAGATGCTTCTACTGCTATGAACTTTTCGAAGAACCTAAAGACCTAAAGGAACACCAGGTTCAGCACACCGATGATGAGGAAAAACGGAAAACAATGAGCAATTATTGGGAACCAACAGTTTATGTGGATATCTCAAACTTGTCCTGTAAGCTCTGCTCGTTTCCATTCACAGACCTGTACAATCTGATCGAACATTTGATTTCAATGCACAAGATGCCGTTTAACAATAATATAGAACTCTTCATGAGCCCATTTAAGCTGAACCAAATATCAGTGCAGTGCATCCAATGCGATCAGGAATGCAGAACATTTGGTCACTTATTGCAACACACAAATAGGGAGCATAAAGGAGTTTCACAGGTCCTGTGCGATATTTGTGGCCGACATTTCAAAAACACGACCTATTTGAAAGAGCACATAAGCAGAGAGCACACAAATAAGGCTGTGAAATGCACAATATGTGACGAGGAGATTCCCAGTTCAACCAGAATGCGAACTCACTTGCAGAGGGCGCATAATAAGAAGTATAAGTGCTTTGTGTGTACGGAGATGTTTGAAACTCATTACAGACGCTCGCATCACATGATGACGGTGCATAAACATAGAGAAGAGGTGAAATGCCAGCATTGTCCGAAGACTTTTGTGTTCAGAAGTACAATGATGAGACATTTGCGAGAGACGCATTTGCAAGAAAGAAACGCTGTGTGTGCTATATGTGGGTGGCGCGCATTTGGACCGCACAGACTGCAGAGGCATATGATGAAACACAGCAACGACAGGAACTTTAAATGTCCATCGTGCGATAAAGCGTTTAAAACTAAGAAGACTATGAAGCAGCATTATCTTAATATACATGAGAAATCAGTTTCAATGCAGAATATACTGCCCGGAGTGGCATACGATGTAACCACTCAAGACACTCAGTTAAGAGAATCTCACGGCCTGGCCACGGGAACGGGCGGCGGCGACGGCGGCGTGACTGGTGGAATAAATATTCGCCTGCCGCGAATTTCACGGTGTTGCCAGTCGCGCCGCCTGCGCTCGTTCCGGTGGCCAGGCCGTCAAAACTTTATAATAAACGAAATCAAACTCGAAGCGAGCAAAGAAAGGCAAATTGAGAGACAGCGAAGAATGGAGGTGTGCAAATTACTGAAGACGATTATAAGGTGGTCTACTCTGATACCGTTCAGGTGGCACGAGTGTAAATTCATGTGCTTCTATTGCGACCACCACTTTGTTGAGGCCTCCAAATTCAGACAACATATAGACACACACCCTGATGTCGATATCAACAACATTCTTCTCAGAGTAATGTATAAGAACTATGGAATTAAACTAGACGTGAAGCAAATTTGGTGCACCATGTGCCACAAGGAATTTGAAATCTTTGATGAGTATATGACACATTTGTCTGAAGAACATGAGCTGGCTTTCGGTAAAGGAGTTGTAGAACAACTTGAGTTGTTCGAACTGGATGATGAAGAGATGCGATGCTTGGAATGCGGAAAGTCTTTTAAGTATTTCTTGAATTTGTTAACGCATACGCATAAGATGCACGTGGATGTAGAGAGAACACACAAATACCTGTGCGAGGTCTGCGGACAAGGGTTTGGAGCCAGAAGCTCTGTTCTGGGTCATATTAGCCAGGTGCATCGTTTACAAAAATGTCGGTTCTGCGACGAAACATTCATGTCTCGATACGCTTTATACAATCACGTTGGTAGCGTACATATTCAAGAAAAACTTAAGTGTCCTTTATGTCCAAAAATACTGCCCAACAGATATTTGAGGAAGCGACACTTAGCTTTGGAACATGATTGCAAAAGAGAGCAGTTGTTTTGTGATTTTTGTAATAAAATGTTTACAAGAAGAAACAAACTTGACATTCATAGACAAAAAATGCATTTTAAGGAGAAGATCTCTTGCGAAGTTTGTGGTGTAATCTTTAGTAGTATGAAATCGTTAATGAAACACTCAGAAACGCATGAGGAGCAAAATAGTTAA
- Protein Sequence
- MRRNVFEVLVRSTLMPFRWLKSSYRCFYCYELFEEPKDLKEHQVQHTDDEEKRKTMSNYWEPTVYVDISNLSCKLCSFPFTDLYNLIEHLISMHKMPFNNNIELFMSPFKLNQISVQCIQCDQECRTFGHLLQHTNREHKGVSQVLCDICGRHFKNTTYLKEHISREHTNKAVKCTICDEEIPSSTRMRTHLQRAHNKKYKCFVCTEMFETHYRRSHHMMTVHKHREEVKCQHCPKTFVFRSTMMRHLRETHLQERNAVCAICGWRAFGPHRLQRHMMKHSNDRNFKCPSCDKAFKTKKTMKQHYLNIHEKSVSMQNILPGVAYDVTTQDTQLRESHGLATGTGGGDGGVTGGINIRLPRISRCCQSRRLRSFRWPGRQNFIINEIKLEASKERQIERQRRMEVCKLLKTIIRWSTLIPFRWHECKFMCFYCDHHFVEASKFRQHIDTHPDVDINNILLRVMYKNYGIKLDVKQIWCTMCHKEFEIFDEYMTHLSEEHELAFGKGVVEQLELFELDDEEMRCLECGKSFKYFLNLLTHTHKMHVDVERTHKYLCEVCGQGFGARSSVLGHISQVHRLQKCRFCDETFMSRYALYNHVGSVHIQEKLKCPLCPKILPNRYLRKRHLALEHDCKREQLFCDFCNKMFTRRNKLDIHRQKMHFKEKISCEVCGVIFSSMKSLMKHSETHEEQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -