Nnit032948.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374644.1:6155149-6161424[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0074 0.81 11.1 5.1 1 23 11 34 11 34 0.95 2 18 0.85 93 4.7 0.3 3 23 58 79 56 79 0.90 3 18 0.19 21 6.7 0.6 3 23 103 123 101 124 0.92 4 18 0.079 8.6 7.9 3.9 3 23 131 152 129 152 0.94 5 18 0.0036 0.4 12.1 1.7 3 23 157 178 156 178 0.92 6 18 0.008 0.88 11.0 0.9 2 23 184 206 183 206 0.93 7 18 0.002 0.22 12.9 0.2 2 23 214 236 213 236 0.92 8 18 0.01 1.1 10.7 0.2 2 23 243 264 242 264 0.96 9 18 0.00094 0.1 14.0 2.9 1 23 314 337 314 337 0.95 10 18 3.4 3.8e+02 2.7 0.1 2 23 362 384 361 384 0.91 11 18 0.53 58 5.3 0.7 2 23 407 428 406 429 0.93 12 18 0.0015 0.17 13.3 0.3 1 23 435 458 435 458 0.95 13 18 0.00081 0.089 14.2 0.3 2 23 462 484 461 484 0.96 14 18 0.052 5.7 8.5 0.2 2 23 490 512 489 512 0.92 15 18 0.00054 0.059 14.7 0.5 1 23 519 542 519 542 0.95 16 18 0.0025 0.27 12.6 0.2 3 23 550 570 549 570 0.94 17 18 0.0064 0.7 11.3 3.3 1 23 576 598 576 598 0.95 18 18 1.9e-07 2.1e-05 25.6 1.3 1 23 604 626 604 627 0.96
Sequence Information
- Coding Sequence
- ATGCTGTTCAAATGGTCCTCCACCAAAGGTTTCTTGTGTTTCTACTGCCATTCTTTCTTCGATAACAGCTCTACGCTTAAGCAACATACAATGACGAGACACCCATGCACACCAATAGACTTAAAAACATATATTCCTAAAAGAGTGAAGTTAGATATTTCAGAAATAATATGCAAAATATGCCAAAGGAAAATTGAGCAACTGCAAGATTTTTTCGATCATACCACTCTAGAACACAATGCGAAATCCAATAAAAAACTAATAGAAAACTTAGATGATTACAAATTGTCAGATGAAAAACTAATATGCTTAAAGTGTGAAGATATATTCCAATCTTTTGCTGCTTTGACAGCTCACCAGAATAGACATCATAACAACAACAATGTCATCTGCAAAACTTGCAACAGGAGTTTTATTAGCGAACGCAGCCTTCAGTGTCATGTGAGGCATTTACATGCCGCTAAAATATGCAAAACCTGCAACAAGACCTTCCCTACCATGTTTAAATTAAAGATGCACAGAGACAACGAGCATAATGCAGACAGCTTAAGGTGTCCTCAGTGCTCTGTATTCTTTACCAGTAGATATCTGAAGAAACGGCATTTAGCCCAGGTCCATGGCGTGGGAAGTCAAGGAACGGTTTGCGATCTATGCTCCAAGATGTTTGTCAACAGGCAAACGTTGGCCGAGCACAGGGCCAACGTCCATAACAAAGAAAAGCGTGTTACTTGTGAAGTGTGCGGTTTTACGGGTTTCAACCAGAATATGCTGACCCTGCACATGGTTAAGCATATCGATTCAAGGCCTTTCTATTGCGATGTCTGGCGCCAGAAAACCTTAGACAACGCGGAGCGTCCACTCAAGTCTGACTTTGCCAACATTCTCAGAATAATAATAGAAACGTCGACTATAATGCCGTTCCGCTGGAGTGGTAACAAGTACATGTGTTTCTTCTGCGGCTGTGTATTCAACGAAAGTTCAACGCTCAAGCAGCACACAAAAGGAGAACATGAGAACCCTAAACTCAAATACGTTCTTACCTTATTTAACATCAGCGCGGTGAAATTGGACATTTCTGAGATATCTTGCAAGCTGTGTCCTAATATCATCAAAAGTTTAGACGATTTCTTAACTCACGCCGCTTCGTTCCACCAATTTGAATTTAACAAAGACGTTGGCAAAGATTTGTACAGCTTCAGACTCTCTGACGGCAACATCAGCTGTCTGGAATGCGAACAAGAGTTCAGATTCTTCGGTCCCTTATTATCACATGTCTACAAACACCATAGTAAGTCCAGCCCGTATTTATGCGATATCTGTGGCCAGGCTTTTGTGGCGAAATTGAACGTGAAGAGCCACATCCGGCATGTGCACAGTAAAAGCGAATGTGACATTTGCCATAACCCGTTCCCGTCTCAGTATGCGATGACCGTACATATGGAGAAAGAGCATAAACAGCACAAATTGAAATGTCCGAAATGCCCAGAGGTTTTGGGCAGCAGATACTTGAAGAAACGCCATCTTGCGTTGTTTCATAACGAGCAAAGTAAGCAGTACAAATGCGACGAGTGCTCGAAGATTTTCACCGAGAGATCAAAAATGTTGGAGCATTTAGGACGTATACATTTGAAGGAGAAAAATGTCGCTTGCGAAATATGCGGATTCAAAGTTTTCAATAAGGCGTATTTAAAATTGCACATGGTAAAACATAATGATTCGCGGCCATTTCAATGCGATGTTTGTAAGAAATCGTTCCAGAGGCGGAAAACTCTGGACTTTCACAAAAGAATACACATCAACGATAAAAGGTACTCGTGCAAGGATTGCGGGAAGGCGTTCGTCCAAGTAACTAGCTTGAAACTGCATATGAGGGTCCATCATTCGAGTAGCGAAGGACCTTCATGGAAATGA
- Protein Sequence
- MLFKWSSTKGFLCFYCHSFFDNSSTLKQHTMTRHPCTPIDLKTYIPKRVKLDISEIICKICQRKIEQLQDFFDHTTLEHNAKSNKKLIENLDDYKLSDEKLICLKCEDIFQSFAALTAHQNRHHNNNNVICKTCNRSFISERSLQCHVRHLHAAKICKTCNKTFPTMFKLKMHRDNEHNADSLRCPQCSVFFTSRYLKKRHLAQVHGVGSQGTVCDLCSKMFVNRQTLAEHRANVHNKEKRVTCEVCGFTGFNQNMLTLHMVKHIDSRPFYCDVWRQKTLDNAERPLKSDFANILRIIIETSTIMPFRWSGNKYMCFFCGCVFNESSTLKQHTKGEHENPKLKYVLTLFNISAVKLDISEISCKLCPNIIKSLDDFLTHAASFHQFEFNKDVGKDLYSFRLSDGNISCLECEQEFRFFGPLLSHVYKHHSKSSPYLCDICGQAFVAKLNVKSHIRHVHSKSECDICHNPFPSQYAMTVHMEKEHKQHKLKCPKCPEVLGSRYLKKRHLALFHNEQSKQYKCDECSKIFTERSKMLEHLGRIHLKEKNVACEICGFKVFNKAYLKLHMVKHNDSRPFQCDVCKKSFQRRKTLDFHKRIHINDKRYSCKDCGKAFVQVTSLKLHMRVHHSSSEGPSWK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -