Nnit033088.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- HINFP
- Assembly
- GCA_947347705.1
- Location
- OX374644.1:7400369-7404229[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.15 16 7.1 1.2 1 23 18 40 18 40 0.98 2 18 0.013 1.4 10.4 4.4 1 23 113 135 113 135 0.97 3 18 0.046 5.1 8.6 0.5 2 23 140 161 139 161 0.96 4 18 0.00016 0.018 16.4 4.0 1 23 166 189 166 189 0.95 5 18 0.036 4 9.0 0.3 2 23 199 221 198 221 0.95 6 18 0.014 1.6 10.3 3.6 1 23 227 250 227 250 0.96 7 18 3.8e-05 0.0042 18.3 2.6 1 23 254 276 254 276 0.98 8 18 0.00012 0.013 16.8 2.4 1 23 282 304 282 304 0.98 9 18 0.58 64 5.2 1.4 1 23 425 447 425 447 0.97 10 18 0.011 1.2 10.6 0.1 2 22 475 495 474 497 0.89 11 18 0.00038 0.042 15.2 3.2 1 23 521 543 521 543 0.98 12 18 0.0019 0.21 13.0 1.1 3 23 549 569 548 569 0.96 13 18 0.023 2.5 9.6 1.9 1 23 574 597 574 597 0.91 14 18 1 1.1e+02 4.4 6.3 1 23 607 630 607 630 0.94 15 18 0.00046 0.05 14.9 2.1 1 23 636 659 636 659 0.97 16 18 3.2e-07 3.5e-05 24.9 0.6 2 23 664 685 663 685 0.97 17 18 5.6e-06 0.00061 21.0 2.5 1 23 691 713 691 713 0.98 18 18 0.043 4.7 8.7 1.8 1 23 719 742 719 742 0.94
Sequence Information
- Coding Sequence
- ATGTTCATACAATATACCACAGTGCGCCCTTTCATATTCATGGGGTCGACCTTCAAATGTTTCTACTGCTTAGAGTACTACTCTGAAGTTGACTTGTTATTAAAACACACTAGTTCCCATAAAAGCCAGGAATATGCGCTGATTATGGAGAAATATTTGCCTAAAGGCAAAAGAACGTTGCAAGTAGATATATCAGATCTAAATTGCAAGTTGTGTAGCGAGAACTACCTCGATTTAGAAGCTGTTAAAGTGCATCTGGAAAGGAGACACGGAAAAACATTTTGCGCTGCCAGTAATGGGATGACTGAATACAACTTGATACTGAGAGATGGGTTGTTCTCCTGTCATGTTTGTAGTGAAGACTTCCATTCTTTCAAACTTCTAAACTCCcatatgaacgatcatatcgtcaaagtagtttgtgagagttgcggcgctgggttcctgaatcagcatatgctaatgaaacataaagagactcatttgacgaggaagtacgattgcaaacattgcgataagtcctattttaagaaaagccagcttaaataccacacagaaatagtacataaaggaaaagatcgtgtcaaaccgaaaaagtgtccgcaatgctctgaaattttcaaagagtattacagcaaagtggcgcatttacgggaaattcacggtgtaacgaagaccttccagtgtcacctttgtaaatcaaatttcgtcactcgaagagcgctgactgagcattcaaatagatatcatacagagaaatacaagtgcaatgtctgttctaaatgcttcgcaatagagtctagattgaagcagcatatgcgaggccatacaggggaaaggaatttcgtgtgtcctgtatgcaagaacgcgtatatgcacaaaatgacgttgagaaaacatatgcggagtcacagtactgaattcaagtttatttgcgcggattgtggtgcagTTGAAATCCAATCAATTTACAATTATTCTGAGATCAAACTTGCCACCAAGGAGGCCGTTGACTTAATCTTTGTAGGTGATACTGAGGCCGACGAAAAAGGAAAATCTGCAAGAAAAACTAAAGGGACTCCAGCTAAAAAGCCTGAGAGTATAACTGCCAAACCCACGCGTAAAGCGATTAAGCCGGATAAGCAGAAGAAAGCAGACAAACGTCCATCTACAAGCATCTGGTCCATGACCCTGGCGGAAAGAGAGAACGCAGCTCTGCTGCTACAGTCCACTACACTCAGGCCCTTCACATATATGCCGTTTCCTCTCCGATTTAAATGTTTCTACTGTGATCAAATTCATCCCGAGTTGGTTACCCTTTTAGACCACACACGCACTCATGTCGTTCCAAGCTGCTCAGATATGCTGAAAAGTTTATTGAAAAGAGGAAAAAAGAAAATTAAAGTTGACATTTCTGAACTTAAATGTAAACTCTGCGATGCGCCATTTTCGAACGTTGATGACGTGCGAAACCATCTTGTTGCAGACCACGAAAAGAAATTTAATACAGATTCTGGGAATGGCATGATGGTTTACAGCTTAAAGACCAAGAATGGCGTGTTTTCCTGTCACCTGTGCAAAGAATCTTTTACTAGCTTTTTCGTTCTAAACAAACACATCAACGTGCACTTCAATAATGCGATTTGTGAACAATGCGGGAAAGGTTTTATAACACATCAAAGATTACAACAGCACAAAGAAATACATCTGAAGGGTAAATTTTACTGCGAAAAATGCGAGAAATATTTTGAAACTGCAGCCAAATTTAAGTATCACAATGATAGAGTCCACGATAAACCAAATAAAGTTTTTAATGTTTACATCTGCCAACACTGCTCTGCAAGGTTCGACCATCATTACGAAAAGATGCGGCATTTGAGCGAGAAACACGATGTTCATTTTAATTACACTTGTGAATTTTGCAAAACAGTTTTCAATTCAGGTAAAGCTTTGACCCGCCACAGAATGAAGTATCATTTGAACAAAATCACTTGCGAAATATGCCAGAAACCATTCGCTGATAGGAGTCACCTTAAGAAACATATGGCTATCCATACAGACGTTAGGGATTTCTCATGCCCGCTGTGCAACAAAACGTATAAACATGAGAAAAATGTTAAGGCGCATATGAAAGTGCACAATCCTGAATGGAAGTTTGCGTGCGCGGAGTGTTTCGTCGGATTCGCTTATAAAACTGAATTTAAGAAACACTTGCATAACACACATGCTAAGAAAACTACCTAA
- Protein Sequence
- MFIQYTTVRPFIFMGSTFKCFYCLEYYSEVDLLLKHTSSHKSQEYALIMEKYLPKGKRTLQVDISDLNCKLCSENYLDLEAVKVHLERRHGKTFCAASNGMTEYNLILRDGLFSCHVCSEDFHSFKLLNSHMNDHIVKVVCESCGAGFLNQHMLMKHKETHLTRKYDCKHCDKSYFKKSQLKYHTEIVHKGKDRVKPKKCPQCSEIFKEYYSKVAHLREIHGVTKTFQCHLCKSNFVTRRALTEHSNRYHTEKYKCNVCSKCFAIESRLKQHMRGHTGERNFVCPVCKNAYMHKMTLRKHMRSHSTEFKFICADCGAVEIQSIYNYSEIKLATKEAVDLIFVGDTEADEKGKSARKTKGTPAKKPESITAKPTRKAIKPDKQKKADKRPSTSIWSMTLAERENAALLLQSTTLRPFTYMPFPLRFKCFYCDQIHPELVTLLDHTRTHVVPSCSDMLKSLLKRGKKKIKVDISELKCKLCDAPFSNVDDVRNHLVADHEKKFNTDSGNGMMVYSLKTKNGVFSCHLCKESFTSFFVLNKHINVHFNNAICEQCGKGFITHQRLQQHKEIHLKGKFYCEKCEKYFETAAKFKYHNDRVHDKPNKVFNVYICQHCSARFDHHYEKMRHLSEKHDVHFNYTCEFCKTVFNSGKALTRHRMKYHLNKITCEICQKPFADRSHLKKHMAIHTDVRDFSCPLCNKTYKHEKNVKAHMKVHNPEWKFACAECFVGFAYKTEFKKHLHNTHAKKTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -