Nnit031978.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nymphula nitidulata
Gene Symbol
-
Assembly
GCA_947347705.1
Location
OX374643.1:2537352-2576630[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.012 1.3 10.5 0.1 1 23 443 465 443 465 0.96
2 11 1.2e-06 0.00014 23.0 1.7 1 23 475 497 475 497 0.97
3 11 1e-05 0.0011 20.2 1.4 1 23 503 525 503 525 0.99
4 11 0.0017 0.19 13.1 3.9 1 23 532 554 532 554 0.99
5 11 3.8e-05 0.0041 18.4 0.3 1 23 560 582 560 582 0.93
6 11 1.3e-06 0.00015 22.9 1.1 1 23 588 610 588 610 0.99
7 11 2.7e-06 0.0003 22.0 1.3 1 23 622 645 622 645 0.97
8 11 0.043 4.7 8.7 3.4 1 23 651 674 651 674 0.88
9 11 0.00014 0.016 16.5 1.2 2 23 681 702 680 702 0.97
10 11 1.8e-05 0.0019 19.4 1.0 1 23 708 730 708 730 0.97
11 11 0.003 0.33 12.4 0.2 1 23 736 760 736 760 0.93

Sequence Information

Coding Sequence
ATGGTGTTAACATTTTTGGAAAAGATGTTACAAGTCCTCAAGACAAATTTCCTTAATGATTTCAAGAACACATTACCACAATTCAATCTCAAATATGAAACCTATGGACAGTTAGTAAATATCAAACCTAATTTGTTGCGAGCCAACACCAACAAGATTGTTTTGCCTGCATCCAAATTGCAGCCTTTACCAGCTAATTATCTAATTGATATTAGGAAATTGGCGAATGCATCAAAGTCTAACATAGCATTAGCTAATGTCGAAAATAGTGCTGTGCCAGGAATTTTTAAGATAGCAGCAGCACCCCCAAAGCCCAATGCAAGTCTCCAATCAACAGTCATAGTTACTCAACCAAAAATAATAGCAACAACGAGTGTTCCACTAATAACTACAGTATCCATGCCAATGCTATCAACTCCAGTGACTCCAAAGAAGACTGATAATCCACTATTAAGTTACAACATGAACAGTTTGCCAAACAATTTTATGTCTTCCAGTATTGTTATTAAGAGCGATAACGAGTTGATTGATAAAGATGCTGAGGCGGAGAATAATGAAAGTTCTATGGATATTGATGAGGATTGTAACCTAGTAACTGCGGATGAAAATGGCAAATTAATATTTAACACTGACGAGGGAAAGAGTAAATCAATTGACATAAAATCAAAAAACAACTTTTTCGACGTCGGAATGTTGTTAGCGCCAGACAGCAATGATGGCGACAAGATCGGCAAGTTCCTGCTAGATAAGTACACTTTACTGAACGAAAATGATGAGGATGATGATGATGAAGAGGAAACAATAGTGATGGAAAACGGAGATAGAACAACCATTATAAGAATGGCTGCCGGACAAAAGTTCATGTATAATGGTAAAGAAATCGCCCTGGTGGAGAACGCTCAAGATGATTTGCAAGATAACGCTGACAGTCATGGTACATTCATTTTTTTATTAGATGACTTAGGGCACCCATGCATTTTTGCTCTCATTCTAGTGGAGATACCAGATTCCAATGAAGAAGCGCAAATAGAACTACAAATGTCAGGGGATGAGGAAACAGCGAATGCTATAATCGCAGCTGCAAAAGAACCTGGTGGAGCCTATATTAAAGTTGAAACGGGGGAAATGTATCGAGTGGAATCAATTAGAAGTAAAGAAAATGATACCAATAGCTCTTTAAATTTAACAGACATCGTAGACCGTAAAGGAGACGTGTTCGTATGTTTAATGTGTGAGAAGAACAAATCTAATGAAGATCAGGAGCAATGTGTGGGCAACGCCGAGACCATGATGGCACATTTGAAGAGTGAACACGGAGCAAGAATCTATATCTGCCCTGTTTGCGGCCTTGTTATGAGGAAGCGATGGGAATATACTAAGCATTTAGAGGAACACTCGGACAAAGGGGTCAAGACCAAATTACACGAATGCGACGTTTGCGACAAGAAATTCAAATCAAAATCGCTGCTAACAGAACACTTGAACATACACACGGGATCCAAACCTTACAGATGTGCCGTCTGCAAAAAGGAATTTGCTTCTAAATATACATATCAAGCTCATCTGAAGACGCATTCGGACCGCCCCCGCCCGTTCAAGTGTACCCAGTGTGAGAAGACATTCTTCACTCAACAGAATCGCGATCAGCATGTGAAAACTCACCTAGGGATCAAGGAGTTCATCTGTAATGTATGTAAGAAGGCGTTCGCCAGCCAGCACAACCTGGAGGTGCACGGCGTGATCCACAGCGGGCACAAGCCGTTCCAGTGCCACACCTGCGGGAAGGCCTTCGCCCGCCGCGCCGAGGTGCGCGACCACGTGCGGACACACACAGTGATGATATGTGTGTCAGGCGAGCGTCCATACGCATGCGACGTCTGCGGCGCGACTTTCTCGCAGAGGTCGAACCTGCACACGCACAAGCGAGTCACGCACTTCGACGACAAACGCCACCACTGCGAGCAATGCCCCAAGCGGTTCAAGCGGAGGCGCCTGTTAGACTTTCATATAAAGGCAGCGCACACAGGCGAACGACCGTTGAAATGCAACATATGTCGTGCTACATTCGTGTATCCCGAGCATTACAAGAAACACGCACGGATACACAGCGGTGAAAAGCCTTTTGAATGCGAGGTTTGCGGTAAATCATTCACGTCGCGAGACAACCGCAACATGCACAGATTCGTACACAGCGACAAGAAGCCTTACGAGTGTCTTACTTGTGGCGCCGGCTATATGAGAAAACAACAACTGTACCAACATATGAGTACTGCTGGTCACGTAGCAGAATCAATAGTGGTGAATCAGCCGAGAGTTATAAAAGCCACAGATAATATAATGACGTCAGACGAGTTAGAATTAAATGAAAGCGACGTCGGTGCtgttgTCAACGACGACCCAGATTCTGCGAAGTTGTACATGACTGAAGATAAAAAAATAATACTGCAAGACAAATTAAGCTCAATATCTTTCCGACATAGCTTCGCTTTGTTTACAGATAATTTAAGCGGTATAATCGGAACGTCATCGGATGACAAGCTGGATGAACAAGAACATATGATAACTGACGAAAATGGTGTTACGGTGAGGTTGATCCAAGTGCAGCTACAAGGCGGACAGACCGGCTGGGTTGCTATCAATGAAAATCATGTATCAGAATAG
Protein Sequence
MVLTFLEKMLQVLKTNFLNDFKNTLPQFNLKYETYGQLVNIKPNLLRANTNKIVLPASKLQPLPANYLIDIRKLANASKSNIALANVENSAVPGIFKIAAAPPKPNASLQSTVIVTQPKIIATTSVPLITTVSMPMLSTPVTPKKTDNPLLSYNMNSLPNNFMSSSIVIKSDNELIDKDAEAENNESSMDIDEDCNLVTADENGKLIFNTDEGKSKSIDIKSKNNFFDVGMLLAPDSNDGDKIGKFLLDKYTLLNENDEDDDDEEETIVMENGDRTTIIRMAAGQKFMYNGKEIALVENAQDDLQDNADSHGTFIFLLDDLGHPCIFALILVEIPDSNEEAQIELQMSGDEETANAIIAAAKEPGGAYIKVETGEMYRVESIRSKENDTNSSLNLTDIVDRKGDVFVCLMCEKNKSNEDQEQCVGNAETMMAHLKSEHGARIYICPVCGLVMRKRWEYTKHLEEHSDKGVKTKLHECDVCDKKFKSKSLLTEHLNIHTGSKPYRCAVCKKEFASKYTYQAHLKTHSDRPRPFKCTQCEKTFFTQQNRDQHVKTHLGIKEFICNVCKKAFASQHNLEVHGVIHSGHKPFQCHTCGKAFARRAEVRDHVRTHTVMICVSGERPYACDVCGATFSQRSNLHTHKRVTHFDDKRHHCEQCPKRFKRRRLLDFHIKAAHTGERPLKCNICRATFVYPEHYKKHARIHSGEKPFECEVCGKSFTSRDNRNMHRFVHSDKKPYECLTCGAGYMRKQQLYQHMSTAGHVAESIVVNQPRVIKATDNIMTSDELELNESDVGAVVNDDPDSAKLYMTEDKKIILQDKLSSISFRHSFALFTDNLSGIIGTSSDDKLDEQEHMITDENGVTVRLIQVQLQGGQTGWVAINENHVSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-