Basic Information

Insect: Nymphula nitidulata
Gene Symbol: ham
Assembly: GCA_947347705.1
Location: OX374633.1:8157770-8180654[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.23 25 6.4 0.0 2 23 125 147 125 147 0.93

2 9 0.003 0.33 12.4 2.2 1 23 154 177 154 177 0.93

3 9 1.5e-08 1.6e-06 29.1 0.1 1 23 183 206 183 206 0.96

4 9 1.3e-06 0.00014 23.0 1.7 1 23 212 234 212 234 0.95

5 9 3.8e-05 0.0041 18.4 7.1 1 23 240 262 240 262 0.99

6 9 9.2e-05 0.01 17.1 0.4 2 21 270 289 269 290 0.94

7 9 1.1e-08 1.2e-06 29.5 0.7 1 23 678 700 678 700 0.98

8 9 3.9e-07 4.3e-05 24.6 1.7 1 23 706 729 706 729 0.97

9 9 4.3e-06 0.00047 21.3 3.3 1 23 735 757 735 757 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.23	25	6.4	0.0	2	23	125	147	125	147	0.93
2	9	0.003	0.33	12.4	2.2	1	23	154	177	154	177	0.93
3	9	1.5e-08	1.6e-06	29.1	0.1	1	23	183	206	183	206	0.96
4	9	1.3e-06	0.00014	23.0	1.7	1	23	212	234	212	234	0.95
5	9	3.8e-05	0.0041	18.4	7.1	1	23	240	262	240	262	0.99
6	9	9.2e-05	0.01	17.1	0.4	2	21	270	289	269	290	0.94
7	9	1.1e-08	1.2e-06	29.5	0.7	1	23	678	700	678	700	0.98
8	9	3.9e-07	4.3e-05	24.6	1.7	1	23	706	729	706	729	0.97
9	9	4.3e-06	0.00047	21.3	3.3	1	23	735	757	735	757	0.98

Sequence Information

Coding Sequence: ATGATAAATGGCCGTGCGACGAGCCGGTGCATCTTGACAGAGACTAATCGCGCCATCTATCGCGAGGCCACAGTACTAGGCAAGAATGGCATCCGAGGCTGGTTGGACGGCACTGCCGAGAAGACCAACTGGTTGAAATTGGTTCGTTCTACGAGTTACCCTCACGACGTGAACGTACAGCATCTATTGCACGCTGGCCAAGTTTGGTATAAGGTGATCCGCGAGATTCATTCGGGTCAAGAGTTGCTGCTTGGTCCCAGGACTCCACTTCCATTGCAAGATGTTCTACCTCCTACAGAACACCAGCCTTCTAGCAACAAGTATTCATCACAGTCTGTGGCTGATGAAGAGGAGAGAGAAGACGCAGAACCCAGGTGCTCGTTTTGCGACGCTCCTTTTCCCAACATAGACGTTCTCGATCGACACCTGATCCAAGTGCACGCGCAACCAGCAGCGGCGTTCCACTGCGAGCTGTGCAACCGCGCGTATTGTTCCCGTGCTTTACTGCTGCGGCACCGTGCCCTTGCGCATACAGATATTAGAAAATACCCCTGCGAAAACTGCCCAAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGCGCGCAGCACGTGGGCGCGCGCAGCCACGCATGCCCCGAGTGCGGCAAGACCTTCGCCACCTCCTCCGGTCTCAAGCAGCACACGCACATACACTCCAGTGTCAAGCCGTTCCAGTGCAAAGTTTGCTTTAAGTCATATACTCAATTTTCAAACTTGTGCCGTCACAAACGAATGCACGTCGCTTGCAGAGCTCTAGTCGAGTGCGGAAAATGTGGTCAGTCTTTCACATCTTACGCTTCGCTGACTAAACATAAACGATTCTGTGAGACTGCTTCTGCTACTGTCAACCTACGAGGACAAATGCCACAGGGACTTCCACAGATCCCGCCGCTGCCAAACGTCGGGATGAATAATCCCAATAATGGGAATCCGTTCCCACTATACAGAGGGCCGACTTTGCCCCTACCGTATAATACATTCGCCCACTATCCAGCTCTCTTCTCGGCTGCTGCAGCTGCATGCCAGCCAGAATTGTTCAACCCATTGCTGTTCAACGTGCAAGGAGCTAGACTAGCTATGGAACATGATATTGCTTTATCTAATGCTAACATGATATCTAAACAACAAGAAGGCCGTATGTCTGTTAAGAGCATCGACAGTTCAACTTCTGTTGAGGAAATCAAGAAGAAGGATTTGGACTTCGAAAACAATAGCAGAATTACTGACAGCTCAGATAGAATGACACCTAAACCGCAGAGTTTGTACACGAAGCAGTCTCCTCCTTCAATGGAAGAGACTACACAGCCCCGCCCCTCACCAGTCATGTCCGTGCCGACTTCTGTAGTTCCGTTTAACTTCACACGAGACGAGTTGAAACGAAAATCGCCCTTCAATTTCTCCCTGAAACTTAACAACAACGATTTACAAAGGAAATCACTATCCCCATCTCTTCCTAAAGATTTATCAAAGAATGTGATCAGTGATGATAAAAATTCTATTTACTCAGATATCGAAGACGACACAAAGAAGGACCAGAGTGACCAGCCTCTAGATTTGTCTGTTTCTCGTAAAAGCGACAAAGAGTCCGAAGCGGATAATGATGATCGCTCCTTTCGCAATTCTTCAGTTAAGTCATATTCACCACCCGAGAGCCCGGCTGCGCGAAGTAAGACTCCAGAGAATGATACGACAGATGTTGACGTAGAAGCAGTAGAGCCAAAACGCGAGGACTCTCCGCTGGTATCGCCACCGCTCGCCTTCCCGATGCCCGTCCATCCCCAACATAATTTAATCGATGCGATGTACCGCCCGCGTTTTCCGTCCTTTCCTACATCAGAATCGCTCTTGAGTTCTCATTCACCTTATGTCCCAAGTCCGTTTAATTTTTTATCTCCACTCCTCGGCACCGATGGGCCAGACCGGCAACCGAGTGCCTACGCAAAATTCCGGGATCTTAATTCTGGTTCGAAACTTCGCGATCGTTATGCGTGCAAATTCTGCGGGAAGGTGTTCCCACGCAGTGCGAACCTGACGCGCCACTTGCGCACACACACTGGCGAGCAACCTTACAAATGTAAATATTGCGAACGTTCATTCTCCATTTCGTCGAACTTGCAGCGGCATGTGCGTAACATACACAACAAGGAGAGGCCGTTTAGGTGTCCGTTGTGCGATAGATGCTTCGGCCAACAGACGAATTTGGACAGGCACTTGAAGAAACATGAGGCAGAGGGTGGTGATTCCCCTAGTTCAGCGGATACTGAGAGGGAGGATGCTTATTTCGACGACATAAGGTCGTTCATGGGTAAGGTGACGTGTTCGCCGAGTGGCACGCCACCGGCGACGTCACCGCACGCGCACCGCGCGTCGTTGGCCATCTCCACATAG
Protein Sequence: MINGRATSRCILTETNRAIYREATVLGKNGIRGWLDGTAEKTNWLKLVRSTSYPHDVNVQHLLHAGQVWYKVIREIHSGQELLLGPRTPLPLQDVLPPTEHQPSSNKYSSQSVADEEEREDAEPRCSFCDAPFPNIDVLDRHLIQVHAQPAAAFHCELCNRAYCSRALLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKSYTQFSNLCRHKRMHVACRALVECGKCGQSFTSYASLTKHKRFCETASATVNLRGQMPQGLPQIPPLPNVGMNNPNNGNPFPLYRGPTLPLPYNTFAHYPALFSAAAAACQPELFNPLLFNVQGARLAMEHDIALSNANMISKQQEGRMSVKSIDSSTSVEEIKKKDLDFENNSRITDSSDRMTPKPQSLYTKQSPPSMEETTQPRPSPVMSVPTSVVPFNFTRDELKRKSPFNFSLKLNNNDLQRKSLSPSLPKDLSKNVISDDKNSIYSDIEDDTKKDQSDQPLDLSVSRKSDKESEADNDDRSFRNSSVKSYSPPESPAARSKTPENDTTDVDVEAVEPKREDSPLVSPPLAFPMPVHPQHNLIDAMYRPRFPSFPTSESLLSSHSPYVPSPFNFLSPLLGTDGPDRQPSAYAKFRDLNSGSKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPSGTPPATSPHAHRASLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01282611;
90% Identity: iTF_01331931;
80% Identity: -