Nnit033084.3
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374644.1:7353158-7357971[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.076 8.4 7.9 1.0 1 21 85 105 85 106 0.95 2 24 2.8 3e+02 3.0 0.4 2 23 134 155 134 155 0.95 3 24 0.0093 1 10.8 0.5 2 23 178 199 177 199 0.97 4 24 0.015 1.7 10.2 0.1 1 23 203 225 203 225 0.95 5 24 0.028 3.1 9.3 0.4 1 15 230 244 230 253 0.78 6 24 0.19 21 6.7 0.6 3 23 261 282 259 282 0.94 7 24 0.0062 0.68 11.4 1.2 1 23 289 312 289 312 0.97 8 24 3.1e-05 0.0034 18.6 0.3 3 23 321 341 319 341 0.98 9 24 6.8 7.4e+02 1.8 1.3 1 23 420 443 420 443 0.90 10 24 1.9 2.1e+02 3.6 0.2 2 20 470 488 469 488 0.94 11 24 0.17 18 6.9 0.9 1 23 514 536 514 536 0.98 12 24 3.4e-05 0.0038 18.5 5.1 1 23 540 562 540 562 0.97 13 24 0.0084 0.92 11.0 0.6 1 23 567 590 567 590 0.96 14 24 0.16 18 6.9 0.2 1 21 596 616 596 619 0.79 15 24 0.022 2.5 9.6 0.2 1 23 626 649 626 649 0.95 16 24 0.01 1.1 10.7 0.2 1 23 697 719 697 719 0.96 17 24 0.0023 0.26 12.7 3.0 1 23 787 809 787 809 0.97 18 24 0.00077 0.085 14.2 0.4 3 23 815 835 814 835 0.95 19 24 0.028 3.1 9.3 0.9 1 23 843 866 843 866 0.90 20 24 0.0011 0.12 13.8 1.4 1 23 872 895 872 895 0.96 21 24 0.024 2.6 9.6 1.5 1 23 901 924 901 924 0.96 22 24 7.3e-05 0.0081 17.4 0.2 1 23 930 952 930 952 0.97 23 24 1.4e-06 0.00015 22.9 1.3 1 23 958 980 958 980 0.99 24 24 4.1e-05 0.0045 18.2 3.8 1 23 986 1008 986 1009 0.95
Sequence Information
- Coding Sequence
- ATGTCTAAAACAGCACGAAGGAATCTGACTCGCAATTTTCTATTTTTAGGACCGCGCGGACAAAATTCCAATGATACTGTGATAAAGCTAGAGGAAGATGTGAGCTTACAAAATGAGCTAGATAATAATTTCCCAGAGAAACGGCGGTACCAGAGAAGTGCAAGGGCAGAAGCTCGTATTATTACTAAGAAGAATGCTAGTGTTGTGCTAGAATGCTGGTCCGTCTGTCCTTTCAGATGGAAAAGGAATAGATTTAAATGCGCCTACTGTGAGACTAATTTCACAGAATGTCAACCGCTCAGGGAACATGTGAGGTTATGTGCCTCAAAGCACAGCGTGAAGGATATCTACAGCAAGTTTAAAGAAATGCCTCTAATCAATGTTGATATAACTGAAGCCAGATGCACCATTTGCTCTTCAAAACTCAATGATGTCACCCAAATGCGCGAACACATTATTCAGCATGGTTATTCGTTTAACTCCAACCATCCAGATGGAGTTTTGCCCTTCTATCTCGATAAAGAGTCGTGGAAATGTGTTATATGCTCAGAAAAGTTCAATAATTTCCTCAAATTATATGAGCACATGAATGTTCACTATCAGCACTACATCTGCGCGACTTGCGGTAAAGGATACATGACTGCGCCTAGGCTACGAAAACATTCAGAAGTTCATATATCAGGGTCTTTTCCTTGCAACGAGTGTGGTAGAGTGTTCACTATGCGAGCTGCTAGAGATTACCACAAAGCTCATGCTCATGCAAAGAGTCCGAGATACGGTTGCCCTCATTGTAATCTTCGGTTTGAAGGATACTATGATAGAATGACACATTTAAATGAAGCACACAGGGAAAGAGAAGTTTCGTACAGCTGTGCACATTGTGAGCTCTCTTTCAAGACAAGCGGGAAACGTGCCATGCACGTTCGTTCCGTGCATTTTCCACCCCAAAGAGAATTCGGTTGTCCATACTGCGAGTGGCAGTTTAAAACTGGTTACGAATTAAAGAGACATATGATAAGGCATACTGGTTCCGCTCCTGCGGTCACAGAACCTAGCGTAGGCATCGCTAAACGCGCGTATAAACCTAGGAAGTTAAAAGAAGTTGTTGGCGCCCGACAGATGAGCAGGCGTCGACGTGCCAACAACGAGGTGACGCCCACATCTGAGAAGCGAATGGCAACTCTCATAATGAGGCAGAATGCGATCACCATTCTAGAATTTTCCACGGCTTGGGCCTTTAGATGGTTTCATGGCGCTTTTTACTGCTCATATTGTCAGGGAAGACATACAGACGTCGACCTTTTACGAGATCACGTCGCTAAATATCATTCAAATGAGAAACCAACTAAAAGTTTATTCTCAAAGATCATAGAAAATAACATGCTAAAAATAGACGTCGCCAATCTGTCCTGTAGGTTGTGTCAAACCAATTTAGAAAATATAGACGATTTAAAGAAACATCTATGGGAATTTCACGCAAAATCTTTAAACTCCGACTATAGTGATGGTGTGTTACCTTTCATACTGGGTGTTAATGAATTTAGTTGTCAGAAATGTTTTGTCGTGTTTGATACCTTCCCAAAAGCGGATCAACATATGAACACGCACTATCCCAATCACGTATGCGATGAATGTGGTAAAACATTTGTGTCAAACACTCGGTTTAGGCATCACATGAAAAGCCATGAAGTAGGGCAGTTTCCGTGTGGAGAATGCAACGCTTTCTTTAAGACGAGAGCGCAACGAATGACGCATAGATTGAGGATACATAAAAATGGTATTAGGTACGCGTGTCCTAAATGTTCACAGGCGTTTACTACTTATTACATAAGAGCGAGGCATTTAATCGAGGAGCATGGTCAGCAAAAAATAGACTATGTCTGTCCAGCTTGCGATAGGGTTTTTGAGAATGGTTCCAAACGCGCAGCTCACTACCGTTTCACACATGCAAATGTAGAAAAGAAATATAATTGGACCGACCTCATACTAAAATGGAAACCGAGGCGCAAGTATCATGATCACAGAAGCAATGCAGCTATTATTATTGAGTGTTCCAACGCTTGTCCCTTTAGGTGGACTCGAGGCACGTTCACTTGCGCTTTCTGCTCGCTCTCTTTTGGAGATCTCTCTGCCCTCCGAGAGCACTCTAACGAACACCCGAACAGAATTGAAGCATTGCGTTTCGCTCGCACGTATGATAACGTTAAAATAGACGTCACCAATCTCAGATGCGAGCTTTGTTTAGAAAACATGAAAGATATACGCACCTTTAGTGACCATTTGATTGATATACACAGCAAATCCATTGATACCAATATAGATTTAGGTGTTACACCATTCCTAACAGAAGGCAAAGGTTTTATTTGCACACATTGCAACGAGAGATTTGAACTATTTTCCAAACTGAATACTCATATAAATCAACACTACCCTAATAATATTTGTTTTGAATGTGGCAAATCGTTTTCCGCTGCGCATAGGCTAAAAGCTCACTTGGTAATACATGAATCTACTAGCAATGGTGAACACAAGTGTAATAAATGTCAACAAGTGTTTGCATCTCGTGTGTTGAAGAATAGTCATGTAGCGTTAGTTCATGGTCCCGAGTATCGGTACAGGTGTCCTTACTGCAAAGATTCTTTCAAAAGATACTCGGACAGAGCAAAGCATCTAAAAGAAGCACATGGTAGGAAAGTAGAATATCCGTGCCATTTGTGTCCTGCTGTTTTTGCCATGTGCAATCAAAGGACAAGACATATTCAACAAGTTCATATAAAACTAAAACAATTTGTCTGTTTGATGTGCCCTTATCAATTTGTAACGGCAGctcaactgaagaaccatatggtgaaacatgtaggagaaaggactttccaatgcgaagtctgcaagaaagcttatacgagattaaaaactctgaaagagcatatgcgcattcataacaacgataagagattcgtttgcgagttttgcaatcatgcatttgttcagaaaagtagtttaaaaagtcatctcagagctcatcaCGCTAATGCTGAAGCTTTGAAAAAACCGAAGTTACCGAATATATATTGA
- Protein Sequence
- MSKTARRNLTRNFLFLGPRGQNSNDTVIKLEEDVSLQNELDNNFPEKRRYQRSARAEARIITKKNASVVLECWSVCPFRWKRNRFKCAYCETNFTECQPLREHVRLCASKHSVKDIYSKFKEMPLINVDITEARCTICSSKLNDVTQMREHIIQHGYSFNSNHPDGVLPFYLDKESWKCVICSEKFNNFLKLYEHMNVHYQHYICATCGKGYMTAPRLRKHSEVHISGSFPCNECGRVFTMRAARDYHKAHAHAKSPRYGCPHCNLRFEGYYDRMTHLNEAHREREVSYSCAHCELSFKTSGKRAMHVRSVHFPPQREFGCPYCEWQFKTGYELKRHMIRHTGSAPAVTEPSVGIAKRAYKPRKLKEVVGARQMSRRRRANNEVTPTSEKRMATLIMRQNAITILEFSTAWAFRWFHGAFYCSYCQGRHTDVDLLRDHVAKYHSNEKPTKSLFSKIIENNMLKIDVANLSCRLCQTNLENIDDLKKHLWEFHAKSLNSDYSDGVLPFILGVNEFSCQKCFVVFDTFPKADQHMNTHYPNHVCDECGKTFVSNTRFRHHMKSHEVGQFPCGECNAFFKTRAQRMTHRLRIHKNGIRYACPKCSQAFTTYYIRARHLIEEHGQQKIDYVCPACDRVFENGSKRAAHYRFTHANVEKKYNWTDLILKWKPRRKYHDHRSNAAIIIECSNACPFRWTRGTFTCAFCSLSFGDLSALREHSNEHPNRIEALRFARTYDNVKIDVTNLRCELCLENMKDIRTFSDHLIDIHSKSIDTNIDLGVTPFLTEGKGFICTHCNERFELFSKLNTHINQHYPNNICFECGKSFSAAHRLKAHLVIHESTSNGEHKCNKCQQVFASRVLKNSHVALVHGPEYRYRCPYCKDSFKRYSDRAKHLKEAHGRKVEYPCHLCPAVFAMCNQRTRHIQQVHIKLKQFVCLMCPYQFVTAAQLKNHMVKHVGERTFQCEVCKKAYTRLKTLKEHMRIHNNDKRFVCEFCNHAFVQKSSLKSHLRAHHANAEALKKPKLPNIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -